BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28820.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328817 jgi|Araly1|328817|fgenesh1_pm.C_scaffold_7001044 782 0.0
> Ahg328817 jgi|Araly1|328817|fgenesh1_pm.C_scaffold_7001044
Length=522
Score = 782 bits (423), Expect = 0.0
Identities = 490/523 (94%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 19 ATGTGTCCTCGAGCTACTCAAACATGCGAAATCTGCGAGAAGGTTGTATCCAAATACAAG 78
||||||||||||||| ||| ||||||||| |||||| ||||| |||||||||||||||||
Sbjct 1 ATGTGTCCTCGAGCTGCTCCAACATGCGATATCTGCAAGAAGCTTGTATCCAAATACAAG 60
Query 79 TGTCCTTCTTGTCTTGTTCCTTACTGCTCATTGGGTTGTTTCAAGATACACAAAGAGACT 138
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TGTCCTTCTTGTCTTGTTCCTTACTGCTCATTGGGTTGTTTCAAGATTCACAAAGAGACT 120
Query 139 CCATGTGCTAAACCGTCTGATCCTTCTTCAACCGAAGAAAAGCCAGCAGCTTCTCCAGCA 198
|||||||||||||| |||| |||||||||||| || || ||||||||||||||||||| |
Sbjct 121 CCATGTGCTAAACCTTCTGGTCCTTCTTCAACAGAGGATAAGCCAGCAGCTTCTCCAGTA 180
Query 199 AAGGAAGTCCCGGTGAAAAGACCTGAGGAAGCTAATGATGTTGTAGAGAAGACACAGCAA 258
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AAGGAAGTCCCGGTGGAAAGACCTGAGGAAGCTAATGATGTAGTAGAGAAGACACAGCAC 240
Query 259 AAGGCTAGTGCTGCATCTCCAGCGAAGGAAATTCCGGTAGCAAGACCGATA-ATTGTAGA 317
|| ||||||||||||||| |||| |||||||||| |||||||||||||||| || |||||
Sbjct 241 AATGCTAGTGCTGCATCTACAGCAAAGGAAATTCTGGTAGCAAGACCGATACAT-GTAGA 299
Query 318 GGAAGAAAAGTATATTTTAGAAAAGACACAGTTCGAGGCTATCGCTTCTTCTAGTGAAAT 377
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGACGAAAAGTATGTTTTAGAAAAGACACAGTTCGAGGCTATCGCTTCTTCTAGTGAAAT 359
Query 378 CCGCGAAGCTCTAAAGGATGAACCTCTTCAGAAACTCATCTACAGTATTGATAGTTCTTC 437
||| |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 360 CCGAGAAGCTCTTAAGGATGAAGCTCTTCAGAAACTCATATACAGTATTGATAGTTCTTC 419
Query 438 CAACCCTTTACAGGAACTCGATGAAGCCATGGGAATAGAAGCATTCCGCGAATTCACAGA 497
||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |
Sbjct 420 CAACCCTTTACAGGAACTCGATGGAGCCATGGGTATAGAAGCTTTCCGCGAATTCACAAA 479
Query 498 CAAGATTTTATCAAACATTTCGAAGAGTAATGACGAGCAGTGA 540
||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 480 CAAGATTCTATCAAACATTTCGAAGAGTAATGACGAACAGTGA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5