BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28830.1 Length=796 Score E Sequences producing significant alignments: (Bits) Value Ahg491875 jgi|Araly1|491875|fgenesh2_kg.7__1308__AT4G28830.1 1147 0.0 > Ahg491875 jgi|Araly1|491875|fgenesh2_kg.7__1308__AT4G28830.1 Length=699 Score = 1147 bits (621), Expect = 0.0 Identities = 673/699 (96%), Gaps = 0/699 (0%) Strand=Plus/Plus Query 42 AAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCT 101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCT 60 Query 102 AAAGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT 161 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAGTGGAATTGGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT 120 Query 162 GCAGAGAATTCATATGGAGATATAACTGATAAGGTCGTTGCGGATTTTGGTTGTGGCTGT 221 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 121 GCAGAGAATTCATATGGAGATATAACTGATAAGGTCGTTGCTGATTTTGGTTGTGGCTGT 180 Query 222 GGTACTTTAAGTGCTGCTGCTGCTCTTCTAGATGCTGCGTCTGTGATTGGATTCGATATC 281 ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| Sbjct 181 GGTACTTTAAGTGCTGCTGCTGCTCTTTTAGATGCAGCGTCTGTGATTGGATTTGATATC 240 Query 282 GACCCTGAATCTCTTGAAACAGCAACACTAAATGCAGAGGAACTTGAGGTCGAGATAGAT 341 |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 241 GACCCTGAGTCTCTTGAAACAGCAACACTAAATGCTGAGGAACTTGAGGTTGAGATAGAT 300 Query 342 TTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAGGCCTGATTGTGGATACGGTTGTA 401 || |||||||||||||| |||||| | |||||||||||||||||||| |||||||||||| Sbjct 301 TTTGTTCAGTGTGACATTACAAAGTTGGAGTTAAAAGGCCTGATTGTTGATACGGTTGTA 360 Query 402 ATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCA 461 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 361 ATGAACCCTCCATTTGGTACACGAAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCA 420 Query 462 ATGAAGGTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAACACATT 521 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ATGAAGGTCGCCTCAAAAGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAACACATT 480 Query 522 AAAAGGGCGGCTTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTATATGTGAGCTCCGA 581 ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 481 AAAAGGGCGTATTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTCTATGTGAGCTCCGA 540 Query 582 TATGACTTGCCAAAACTCTACAAGTTCCACAAGCGAAAAGAAGTTGATATTGCCGTTGAT 641 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 541 TATGACTTGCCTAAACTCTACAAGTTCCACAAGCGAAAAGAAGTCGATATTGCTGTTGAT 600 Query 642 CTCTGGCGTTTTGAGCCTAGACAGAACTAGACCGCCACGATCATGTAATGTTTAGCTTTG 701 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 601 CTCTGGCGTTTTGAGCCTAGATAGAGCTAGACCGCCACGATCATGTAATGTTTAGCTTTG 660 Query 702 AGATAAGATTGATTATGTATGGAAGGATTCATGGTATGA 740 ||||||| ||||||||||||||| ||||||||| ||||| Sbjct 661 AGATAAGCTTGATTATGTATGGAGGGATTCATGATATGA 699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29392769007 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5