BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28830.1

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491875 jgi|Araly1|491875|fgenesh2_kg.7__1308__AT4G28830.1        1147    0.0  


> Ahg491875 jgi|Araly1|491875|fgenesh2_kg.7__1308__AT4G28830.1
Length=699

 Score = 1147 bits (621),  Expect = 0.0
 Identities = 673/699 (96%), Gaps = 0/699 (0%)
 Strand=Plus/Plus

Query  42   AAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCT  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCT  60

Query  102  AAAGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT  161
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAAGTGGAATTGGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT  120

Query  162  GCAGAGAATTCATATGGAGATATAACTGATAAGGTCGTTGCGGATTTTGGTTGTGGCTGT  221
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  GCAGAGAATTCATATGGAGATATAACTGATAAGGTCGTTGCTGATTTTGGTTGTGGCTGT  180

Query  222  GGTACTTTAAGTGCTGCTGCTGCTCTTCTAGATGCTGCGTCTGTGATTGGATTCGATATC  281
            ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct  181  GGTACTTTAAGTGCTGCTGCTGCTCTTTTAGATGCAGCGTCTGTGATTGGATTTGATATC  240

Query  282  GACCCTGAATCTCTTGAAACAGCAACACTAAATGCAGAGGAACTTGAGGTCGAGATAGAT  341
            |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  241  GACCCTGAGTCTCTTGAAACAGCAACACTAAATGCTGAGGAACTTGAGGTTGAGATAGAT  300

Query  342  TTCGTTCAGTGTGACATCACAAAGCTAGAGTTAAAAGGCCTGATTGTGGATACGGTTGTA  401
            || |||||||||||||| |||||| | |||||||||||||||||||| ||||||||||||
Sbjct  301  TTTGTTCAGTGTGACATTACAAAGTTGGAGTTAAAAGGCCTGATTGTTGATACGGTTGTA  360

Query  402  ATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCA  461
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  361  ATGAACCCTCCATTTGGTACACGAAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCA  420

Query  462  ATGAAGGTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAACACATT  521
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  ATGAAGGTCGCCTCAAAAGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAACACATT  480

Query  522  AAAAGGGCGGCTTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTATATGTGAGCTCCGA  581
            |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  481  AAAAGGGCGTATTTGCGTGATTTCAATGCGAAAAGTGCTGAAGTTCTATGTGAGCTCCGA  540

Query  582  TATGACTTGCCAAAACTCTACAAGTTCCACAAGCGAAAAGAAGTTGATATTGCCGTTGAT  641
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  541  TATGACTTGCCTAAACTCTACAAGTTCCACAAGCGAAAAGAAGTCGATATTGCTGTTGAT  600

Query  642  CTCTGGCGTTTTGAGCCTAGACAGAACTAGACCGCCACGATCATGTAATGTTTAGCTTTG  701
            ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  601  CTCTGGCGTTTTGAGCCTAGATAGAGCTAGACCGCCACGATCATGTAATGTTTAGCTTTG  660

Query  702  AGATAAGATTGATTATGTATGGAAGGATTCATGGTATGA  740
            ||||||| ||||||||||||||| ||||||||| |||||
Sbjct  661  AGATAAGCTTGATTATGTATGGAGGGATTCATGATATGA  699



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29392769007


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5