BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28840.1

Length=750
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg353917 jgi|Araly1|353917|fgenesh1_pg.C_scaffold_7001090           856    0.0  


> Ahg353917 jgi|Araly1|353917|fgenesh1_pg.C_scaffold_7001090
Length=555

 Score =  856 bits (463),  Expect = 0.0
 Identities = 528/558 (95%), Gaps = 9/558 (2%)
 Strand=Plus/Plus

Query  101  ATGGGTGGATCTTCGTCATCATCACCAACATCTTCTTCTTCTTCTCCGGCAAAGAGAGGG  160
            ||||||||||| ||||| || ||||| |||   |||||||||||||||||||||||||||
Sbjct  1    ATGGGTGGATCGTCGTCGTCGTCACCGACA---TCTTCTTCTTCTCCGGCAAAGAGAGGG  57

Query  161  AAGAACAAGAATGGTTCTGACAAGCCTAAGCAGCCTCAGAGAGGTCTCGGCGTCGCGCAG  220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   AAGAACAAGAATGGTTCTGACAAGCCTAAGCAGCCTCAGAGAGGTCTCGGCGTCGCGCAG  117

Query  221  TTAGAGAAGATTAGATTACACGGCGAGTATAACTGCAACAGCTTCAATACCTACCCTTCT  280
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  118  TTAGAGAAGATTAGATTACACGGCGAGTATAACTGCAACAGCTTCAATACTTACCCTTCT  177

Query  281  TATCATCCCTCAACTT--A-T---CAGGAGGATGTGAGGATCCAAGGAGGATatccatcc  334
            ||||||||||||||||  | |   ||||||||||||||||| ||||||||||||||||||
Sbjct  178  TATCATCCCTCAACTTTCAATAATCAGGAGGATGTGAGGATGCAAGGAGGATATCCATCC  237

Query  335  ataccatcgtcatcaccatccttttcatatgcatcatcatcaccaccaccaGCTCCTTAT  394
            |||||||| |||||||||||||||||||| ||||||||| ||||| || | | |||||||
Sbjct  238  ATACCATCTTCATCACCATCCTTTTCATACGCATCATCACCACCATCATCGGGTCCTTAT  297

Query  395  GGCTTTCATCCGAACATGATGATGAATGCAAATAATGATCAATACGAGAGAACAACCATA  454
            |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  298  GGCTTTCACCCAAACATGATGATGAATGCAAATAATGATCAATACGAGAGAACAACAATA  357

Query  455  AGATACGGAGATTCTCAGCCTCACAGAGCACCAAGTTGGAACCCGAGCTACGGCATCTTG  514
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  358  AGATACGGAGATTCTCAGCCTCACATAGCACCAAGTTGGAACCCGAGCTACGGCATCTTG  417

Query  515  GAGAGCCAGCATTTTGTGGAACCAAACACAACCAGACACTTCTTACATGAGGATCAGAGA  574
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  418  GAGAGCCAACATTTTGTGGAACCAAACACAACAAGACACTTCTTACATGAGGATCAGAGA  477

Query  575  AATATATCGTTGGGATCGGGTATTCAGAACTTCGAAACCAGTGAAGCAAACGAGCTAGAT  634
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  478  AATATATCATTGGGATCGGGTATTCAGAACTTCGAAACGAGTGAAGCAAACGAGCTAGAT  537

Query  635  TTGGAATTGAGATTGTAA  652
            ||||||||||||||||||
Sbjct  538  TTGGAATTGAGATTGTAA  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27639114825


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5