BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28850.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491872 jgi|Araly1|491872|fgenesh2_kg.7__1305__AT4G28850.1 1279 0.0
Ahg889930 jgi|Araly1|889930|Al_scaffold_0007_1916 1247 0.0
> Ahg491872 jgi|Araly1|491872|fgenesh2_kg.7__1305__AT4G28850.1
Length=930
Score = 1279 bits (692), Expect = 0.0
Identities = 856/935 (92%), Gaps = 12/935 (1%)
Strand=Plus/Plus
Query 3 CCAATCCAAAACATTCCAAACACAAATCAAATTCGTAAG--ATGGCGGGTCTTCAAGCGA 60
||||||||||||||| |||| |||||||||||||||||| ||||| ||||||| |||||
Sbjct 1 CCAATCCAAAACATTTCAAAGACAAATCAAATTCGTAAGATATGGCCGGTCTTCGAGCGA 60
Query 61 AGACGTTAATGTTCGTTCTGGCAGCTGCCTTAGCGACTCTTGGTCGCACATTTGTGGAGG 120
|||||||||| |||||||||| || || ||||||||||| | || ||||||||||||||
Sbjct 61 AGACGTTAATATTCGTTCTGGTGGCCGCGTTAGCGACTCTAGATCACACATTTGTGGAGG 120
Query 121 CAGACTTCAGT-AAGAATTTTATTGTTACATGGGGTAAAGATCACA-TGTTCATGAATGG 178
||||||||| | |||||| | || ||||||||||| ||||||| | || | |||| |||
Sbjct 121 CAGACTTCA-TCAAGAATATGATAGTTACATGGGGCCAAGATCATATTGGT-ATGACTGG 178
Query 179 T-ACCAACCTTCGA-CTTGTCCTAGACAAATCTGCAGGATCTGCTATTAAATCAAAGGTG 236
| | ||||||| | |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 179 TGA-CAACCTT-AAGCTTGTCCTAGACCAATCTGCAGGATCTGCTATCCGATCAAAGGTG 236
Query 237 GCTCATTTGTTTGGAAGCGTAGAAATGCTCATCAAACTTGTGCCAGGGAATTCTGCTGGA 296
||||||||||||||||||||||||||| || ||||||||||||| ||| |||||||||||
Sbjct 237 GCTCATTTGTTTGGAAGCGTAGAAATGTTCCTCAAACTTGTGCCTGGGGATTCTGCTGGA 296
Query 297 ACCGTTGCAGCCTATTACTTATCGTCTACGGGAAGTACACACGATGAGATAGACTTCGAG 356
||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||| |||
Sbjct 297 ACCGTTGTAGCCTATTACTTATCATCTACGGGAACTGCACACGATGAGATAGACTTTGAG 356
Query 357 TTCCTAGGAAATGCGACTGGTCAGCCGTACACGATCCACACCAACTTATATGCTCAAGGG 416
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 357 TTCCTAGGAAATGCGACTGGTGAGCCGTACACGATCCACACCAACTTATATGTTCAAGGG 416
Query 417 AAAGGAAACCGCGAACAACAATTCCGGCCATGGTTCAACCCGACCAATGGTTTCCACAAC 476
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 417 AAAGGAAACCGAGAGCAACAATTCCGGCCATGGTTCAACCCGACCACTGGTTTCCACAAC 476
Query 477 TATACCATCCATTGGAACCCATCCGAAGTTGTGTGGTTCGTCGATGGAACTCCGATCAGA 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 TATACCATCCATTGGAACCCATCCGAAATTGTGTGGTTCGTCGATGGAACTCCGATCAGA 536
Query 537 GTTTTTAGAAACTACGA-AAGTGAAGGAATCGCATACCCGAACAAGCAAGGTATGAAAGT 595
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTTTTAGGAACTACGAGAA-AGAAGGAATCGCATACCCGAACAAGCAAGGTATGAAAGT 595
Query 596 GTTTGCGAGTCTATGGAACGCAGAAGACTGGGCAACACAAGGAGGTCGAGTGAAGACTAA 655
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 596 GTTTGCCAGTCTATGGAACGCAGACGATTGGGCAACACAAGGAGGTCGAGTGAAGACTAA 655
Query 656 CTGGACGCTAGCACCATTTGTGGCCGAGGGTCGTAGGTACAAGGCAAGAGCTTGTTTGTG 715
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 656 CTGGACGCTAGCACCATTTGTGGCCGAGGGTCGTAGGTACAGGGCAAGAGCTTGCTTGTG 715
Query 716 GAAGGGATCAGTCAGCATCAAGCAATGTGTAGATCCAACTATACGGTCTAATTGGTGGAC 775
| ||||||||||||||||||||||||| | ||| |||||| | | |||||||||||||||
Sbjct 716 GCAGGGATCAGTCAGCATCAAGCAATGCGCAGACCCAACTGTGCCGTCTAATTGGTGGAC 775
Query 776 ATCACCATCATTTAGTCAGCTCACTGCTTCGCAGCTGACGAAGATGCAAAAGATAAGAGA 835
||||||||| ||||| ||||||||| ||| |||||| || ||||||||||||||||||||
Sbjct 776 ATCACCATCGTTTAGCCAGCTCACTACTTTGCAGCTCACAAAGATGCAAAAGATAAGAGA 835
Query 836 TGGTTTCATGATCTATGATTATTGCAAGGACACTAACAGATTTAAAGGTGTTATGCCTCC 895
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 836 TGGTTTCATGATCTATGATTATTGCAAGGACACTAACAGGTTTGGAGGTGTTATGCCTCC 895
Query 896 GGAATGCTCGAAGAAGCAATTCTAATTCAAGTTTC 930
||||||||||| ||||||||||||| |||||||
Sbjct 896 TAAATGCTCGAAGCAGCAATTCTAATTAAAGTTTC 930
> Ahg889930 jgi|Araly1|889930|Al_scaffold_0007_1916
Length=879
Score = 1247 bits (675), Expect = 0.0
Identities = 816/884 (92%), Gaps = 10/884 (1%)
Strand=Plus/Plus
Query 42 ATGGCGGGTCTTCAAGCGAAGACGTTAATGTTCGTTCTGGCAGCTGCCTTAGCGACTCTT 101
||||| ||||||| |||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1 ATGGCTGGTCTTCGAGCGAAGACGTTAATGTTCGTTCTGGTGGCCGCGTTAGCGACTCTT 60
Query 102 GGTCGCACATTTGTGGAGGCAGACTTCAGTAAGAATTTTATTGTTACATGGGGTAAAGAT 161
| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 61 GATCGCACATTTGTGGAGGCAGACTTCAGCAAGAATATGATTGTTACATGGGGTAAAGAT 120
Query 162 CACA-TGTTCATGAATGGTACCAACCTTCGACTTGTCCTAGACAAATCTGCAGGATCTGC 220
|| | || | |||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CATATTGGT-ATGACTGGTGGCAACCTTCGGCTTGTCCTAGACAAATCTGCAGGATCTGC 179
Query 221 TATTAAATCAAAGGTGGCTCATTTGTTTGGAAGCGTAGAAATGCTCATCAAACTTGTGCC 280
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TATTCGATCAAAGGTGGCTCATTTGTTTGGAAGTGTAGAAATGCTCATCAAACTTGTGCC 239
Query 281 AGGGAATTCTGCTGGAACCGTTGCAGCCTATTACTTATCGTCTACGGGAAGTACACACGA 340
|||| |||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||
Sbjct 240 AGGGGATTCTGCTGGAACCGTTGTAGCCTATTACCTATCGTCCACGGGAAGTGCACACGA 299
Query 341 TGAGATAGACTTCGAGTTCCTAGGAAATGCGACTGGTCAGCCGTACACGATCCACACCAA 400
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TGAGATAGACTTTGAGTTCCTAGGAAATTCGACTGGTCAGCCGTACACGATCCACACCAA 359
Query 401 CT-TATATGCTCAAGGGAAAGGAAACCGCGAACAACAATTCCGGCCATGGTTCAACCCGA 459
| |||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 360 -TATATATGTTCAAGGGAAAGGAAACCGTGAGCAACAATTCCGGCCATGGTTCAATCCGA 418
Query 460 CCAATGGTTTCCACAACTATACCATCCATTGGAACCCATCCGAAGTTGTGTGGTTCGTCG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCAATGGTTTCCACAACTATACCATCCATTGGAACCCATCCGAAGTTGTGTGGTTCGTCG 478
Query 520 ATGGAACTCCGATCAGAGTTTTTAGAAACTACGA-AAGTGAAGGAATCGCATACCCGAAC 578
||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct 479 ATGGAACTCCGATCAGAGTATTTAGGAACTACGAGAA-AGAAGGAATCGCATACCCGAAC 537
Query 579 AAGCAAGGTATGAAAGTGTTTGCGAGTCTATGGAACGCAGAAGACTGGGCAACACAAGGA 638
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 538 AAGCAAGGTATGAAAGTGTTTGCGAGTCTATGGAACGCAGACGACTGGGCAACCCAAGGG 597
Query 639 GGTCGAGTGAAGACTAACTGGACGCTAGCACCATTTGTGGCCGAGGGTCGTAGGTACAAG 698
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 598 GGTCGAGTGAAGACCAACTGGACGCTAGCACCATTTGCGGCCGAGGGTCGTAGATACAAG 657
Query 699 GCAAGAGCTTGTTTGTGGAAGGGATC-AGTCAGCATCAAGCAATGTGTAGATCCAACTAT 757
|||||||||||||||||| ||| || | |||||||||| ||||| | |||||||||| |
Sbjct 658 GCAAGAGCTTGTTTGTGGCGGGGGTCGA-TCAGCATCAAACAATGCGCAGATCCAACTGT 716
Query 758 ACGGTCTAATTGGTGGACATCACCATCATTTAGTCAGCTCACTGC-TTCGCAGCTGACGA 816
| |||||||||||||||||||||||| ||||| |||||||||| || |||||| || |
Sbjct 717 GCCGTCTAATTGGTGGACATCACCATCGTTTAGCCAGCTCACTGAATT-GCAGCTCACAA 775
Query 817 AGATGCAAAAGATAAGAGATGGTTTCATGATCTATGATTATTGCAAGGACACTAACAGAT 876
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 776 AGATGCAAAAGATAAGAGATGGTTTCATGATATATGATTATTGCAAGGATACTAACAGAT 835
Query 877 TTAAAGGTGTTATGCCTCCGGAATGCTCGAAGAAGCAATTCTAA 920
|| |||||||||||||||||||||| ||||||| ||||||||||
Sbjct 836 TTCAAGGTGTTATGCCTCCGGAATGTTCGAAGATGCAATTCTAA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5