BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28860.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491869 jgi|Araly1|491869|fgenesh2_kg.7__1302__AT4G28880.1 1724 0.0
Ahg491871 jgi|Araly1|491871|fgenesh2_kg.7__1304__AT4G28860.2 1402 0.0
Ahg945884 jgi|Araly1|945884|scaffold_702113.1 274 2e-72
> Ahg491869 jgi|Araly1|491869|fgenesh2_kg.7__1302__AT4G28880.1
Length=1680
Score = 1724 bits (933), Expect = 0.0
Identities = 1196/1323 (90%), Gaps = 17/1323 (1%)
Strand=Plus/Plus
Query 16 CCCTAAATTGATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGTGATCGGAGCTGC 75
|||||||| ||||||||| | |||||||||||||||||||| || |||||||||||||
Sbjct 35 CCCTAAATCCTTATCTCTAT-CATTGCGCATGATCCAGATTCGTTTTTGATCGGAGCTGC 93
Query 76 CATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGGCGGTGGTTCCTT 135
||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 94 CATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATCGGCGGTGGTT-CTT 152
Query 136 T-GGAGAGATTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAGCTGTTAAGATCG 194
| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 153 TCGGAGAGATTTTTCTAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTAAGATCG 212
Query 195 AGAACAGTAAAACAAAACATCCTCAGCTTCTCTATGAAGCTAAGCTATATAGAACTCTTG 254
|||||||||||||||| ||||| || |||||||||||||| ||||||||||||| |||||
Sbjct 213 AGAACAGTAAAACAAAGCATCCCCAACTTCTCTATGAAGCCAAGCTATATAGAATTCTTG 272
Query 255 AAGGAGGAAGTGGAATTCCGCGCATAAGATGGTTTGGAGTTGATGGAACAGAGAATGCTT 314
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 273 AAGGAGGAAGTGGAATTCCGCGCATAAAATGGTTTGGAGTGGATGGAACAGAGAATGCTT 332
Query 315 TAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGAAAAT 374
|||||||||||||||| || ||||||||||||||||| ||||| || |||||||| ||||
Sbjct 333 TAGTGATGGATTTGCTAGGGCCAAGTCTCGAAGATCTATTCGTGTATTGTGGGAGGAAAT 392
Query 375 TTTCACCAAAGACGGTCTTGATGTTGGCTGATCAAATGCTAACTAGAATAGAATATGTAC 434
| ||||| ||||| |||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 393 TCTCACCTAAGACAGTCTTGATGTTGGCTGATCAAATGCTGACAAGAATAGAATTTGTAC 452
Query 435 ATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATAACTTTCTCATGGGCCTAGGCC 494
|||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 453 ATTCCAAAGGATATCTGCATAGAGATATCAAACCTGATAACTTCCTCATGGGCCTAGGTC 512
Query 495 GCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGGCCAAAAGATATCGTGATGCCA 554
| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 513 GGAAAGCAAATCAGGTTTATCTAATTGACTTCGGACTTGCTAAAAGATATCGTGATGCCA 572
Query 555 ACACCAACCGCCACATCCCTTATAGGGAAAACAAGAATTTAACAGGAACTGCACGATATG 614
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 573 ACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATTTAACAGGAACTGCACGATATG 632
Query 615 CAAGTTGCAATACACATCTTGGTATTGAGCAAGGTAGACGGGATGACCTAGAGTCTCTTG 674
| || ||||||||||||||||| ||||||||| || |||||||||||||||| || || |
Sbjct 633 CTAGCTGCAATACACATCTTGGAATTGAGCAAAGTCGACGGGATGACCTAGAATCGCTGG 692
Query 675 GATATGTGCTTCTGTACTTCTTAAGAGGAAGCCTTCCATGGCAGGGTCTTAAGGCTGTTG 734
|||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 693 GATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCATGGCAGGGTCTTAAGGCTGTTG 752
Query 735 ACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGATATCAACTCCTATTGAGGTTC 794
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 753 ACAAGAAGCAAAAATATGATAAAATCTGTGAGAAGAAGATATCAACTCCTATTGAGGTTC 812
Query 795 TATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTCATTATTGCCACACACTGACAT 854
||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 813 TATGCAAAAATCACCCTGTGGAGTTTGCTTCATATTTTCATTACTGCCATACACTGACAT 872
Query 855 TTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTCTCACGGG 914
||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 873 TTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTTTCGCGGG 932
Query 915 AAGGATATGAGTTTGACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGA 974
||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 933 AAGGATATGAGTTCGACTATATATTTGACTGGACTATTATAAAGTATCAACAAGCACAGA 992
Query 975 AAACTAGAAGTCAGTCTCAGGCCGTTCCTGGGTCTAGTAATGCTCGTGCAATACCAATGG 1034
|| |||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 993 AATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGTAATGCTCGTGCAATGCCAATGG 1052
Query 1035 ACACAAGCAATCATCGAGGAGGAACTAAGATTTCACATGAAGCCCAAGTCTCTGACCGTG 1094
|||||||||||||||| |||||| | || ||||| |||||||| | | |||||| || |
Sbjct 1053 ACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATGAAGCCGAGGCCTCTGAACGCG 1112
Query 1095 TCAGACCGGCTAATGCCAGTGGTCCA-AGCCCACAGATTAATACCGCTGTAGGGAGGAGT 1153
||||| | |||||||||| ||| ||| || | | | |||||| |||| ||| |||| |
Sbjct 1113 TCAGATCAGCTAATGCCATTGGCCCACAGATAA-ATAATAATACTGCTGCAGGAAGGACT 1171
Query 1154 CTGGGTTTTGATCAA---GTCCACAAGAATATGAACATGCCATCATCCACTTCATTATCT 1210
||||| |||||||| |||||||||||||||||||||||||| | |||||| |||||
Sbjct 1172 CTGGGGTTTGATCACCCTGTCCACAAGAATATGAACATGCCATC--C-ACTTCAGTATCT 1228
Query 1211 CCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCTCAAATTCTGGGTTTGGGAGC 1270
||||||||||||||||||||||||||| |||| || | ||||||||||||| ||||||
Sbjct 1229 CCTGCGGGTACCTCAAAAAGAAATGTCGGACCTGAGATCTCAAATTCTGGGCATGGGAGT 1288
Query 1271 GGGAATAAAACCGGCGGTTGGACTTCAC-CATTCATGTCACCGGGGAAATGATGCaaa-a 1328
||||||| ||||||| | ||||||| | |||||||||| || | ||||||||||||| |
Sbjct 1289 GGGAATAGAACCGGC--T-GGACTTC-CTCATTCATGTCTCCAGAGAAATGATGCAAAGA 1344
Query 1329 aaa 1331
|||
Sbjct 1345 AAA 1347
> Ahg491871 jgi|Araly1|491871|fgenesh2_kg.7__1304__AT4G28860.2
Length=1381
Score = 1402 bits (759), Expect = 0.0
Identities = 928/1007 (92%), Gaps = 21/1007 (2%)
Strand=Plus/Plus
Query 194 GAGAACAGTAAAACAAAACATCCTCAGCTTCTCTATGAAGCT-AAGCTATATAGAACTCT 252
||||||||||||||||| |||||||| ||||||||||||| | |||||||| |||| |||
Sbjct 232 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAG-TCAAGCTATACAGAATTCT 290
Query 253 TG-A--AGG-A-G--G------A------AGTGGAATTCCGCGCATAAGATGGTTTGGAG 293
|| | ||| | | | | ||||||||||||||||| |||||||||||||
Sbjct 291 TGAAGGAGGAAGGATGCTTCTCATTCTCTAGTGGAATTCCGCGCATGAGATGGTTTGGAG 350
Query 294 TTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTT 353
||||||||||||| |||||| |||||||||||||| | || ||||||||||||||||| |
Sbjct 351 TTGATGGAACAGAAAATGCTCTAGTGATGGATTTGTTAGGGCCAAGTCTCGAAGATCTAT 410
Query 354 TCGTCTACTGTGGGAGAAAATTTTCACCAAAGACGGTCTTGATGTTGGCTGATCAAATGC 413
|||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 411 TCGTATATTGTGGGAGGAAATTTTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 470
Query 414 TAACTAGAATAGAATATGTACATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATA 473
| || |||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 471 TGACAAGAATAGAATTTGTACATTCCAAAGGATACCTGCACAGAGATATCAAACCAGATA 530
Query 474 ACTTTCTCATGGGCCTAGGCCGCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGG 533
|||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 531 ACTTTCTCATGGGCCTTGGCCGGAAAGCGAATCAGGTTTATCTGATTGACTTTGGACTTG 590
Query 534 CCAAAAGATATCGTGATGCCAACACCAACCGCCACATCCCTTATAGGGAAAACAAGAATT 593
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 591 CCAAAAGATATCGTGATGCCAGCACCAACCGCCACATCCCGTATAGGGAAAACAAGAATT 650
Query 594 TAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGTATTGAGCAAGGTAGAC 653
| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 651 TGACAGGAACTGCACGGTATGCAAGTTGCAATACACATCTTGGTATTGAGCAAAGTCGAC 710
Query 654 GGGATGACCTAGAGTCTCTTGGATATGTGCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 713
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 711 GGGATGACCTAGAGTCTCTTGGATATGTCCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 770
Query 714 GGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGA 773
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 771 GGCAGGGTCTTAAGGCGGTTGACAAGAAGCAAAAATATGACAAAATTTGTGAAAAGAAGA 830
Query 774 TATCAACTCCTATTGAGGTTCTATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTC 833
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 831 TATCAACTCCGATTGGGGTTCTATGCAAAAACCACCCCGTGGAGTTTGCTTCATATTTTC 890
Query 834 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTT 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 891 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCTGCTTT 950
Query 894 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTATATATATGACTGGACTATTA 953
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 951 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTTTATATATGACTGGACTATTA 1010
Query 954 TAAAGTATCAGCAATCACAGAAAACTAGAAGTCAGTCTCAGGCCGTTCCTGGGTCTAGTA 1013
|||||||||||||| |||||||||||| || || ||||||||| ||||||||||||||||
Sbjct 1011 TAAAGTATCAGCAAGCACAGAAAACTAAAAATCTGTCTCAGGCAGTTCCTGGGTCTAGTA 1070
Query 1014 ATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGAGGAACTAAGATTTCACATG 1073
||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 1071 ATGTTCGTGCAATGCCAATGGATACAAGTAATCATCGAGGAGGAACTAATATTTCACATG 1130
Query 1074 AAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTA 1133
|||| ||||||||||||||||||||| | |||||||||| |||||| ||||||||||||
Sbjct 1131 AAGCACAAGTCTCTGACCGTGTCAGAACTGCTAATGCCAATGGTCCCCGCCCACAGATTA 1190
Query 1134 ATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT 1180
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1191 ATACCGCTACAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT 1237
Score = 279 bits (151), Expect = 3e-74
Identities = 178/191 (93%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 4 GAAGTAAAAAAGCCCTAAATTGATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGT 63
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGCAAAATAGCCCTAAATTCATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGT 60
Query 64 GATCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGG 123
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GATCGGAGCTACCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATTGG 120
Query 124 CGGTGGTTCCTTTGGAGAGA-TTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAG 182
||||| ||| |||||||| | ||||| | |||| |||| |||||||||||||||||||||
Sbjct 121 CGGTGTTTCATTTGGAGAAAATTTTC-TGGCTATGCACGTCGATACCTTCGAGATTGTAG 179
Query 183 CTGTTAAGATC 193
|||||||||||
Sbjct 180 CTGTTAAGATC 190
> Ahg945884 jgi|Araly1|945884|scaffold_702113.1
Length=389
Score = 274 bits (148), Expect = 2e-72
Identities = 176/189 (93%), Gaps = 3/189 (2%)
Strand=Plus/Plus
Query 9 AAAAAAGCCCTAAATTGATATCTCTATCCCTTGCGC---ATGATCCAGATTCGGTTGTGA 65
|||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 83 AAAAAAACCCTAAATTTATATATCTATCCCTTGCGCATGATGATCCAGATTCGGTTGTGA 142
Query 66 TCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGGCG 125
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 143 TCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTAGGACGGAAGATTGGCT 202
Query 126 GTGGTTCCTTTGGAGAGATTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAGCTG 185
|||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 203 GTGGTTCCTTTGGAGAAATTTTTTTCGCTACACACATCGATACCTTCGAGATTGTAGCTG 262
Query 186 TTAAGATCG 194
|||||||||
Sbjct 263 TTAAGATCG 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5