BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28860.1 Length=1668 Score E Sequences producing significant alignments: (Bits) Value Ahg491869 jgi|Araly1|491869|fgenesh2_kg.7__1302__AT4G28880.1 1724 0.0 Ahg491871 jgi|Araly1|491871|fgenesh2_kg.7__1304__AT4G28860.2 1402 0.0 Ahg945884 jgi|Araly1|945884|scaffold_702113.1 274 2e-72 > Ahg491869 jgi|Araly1|491869|fgenesh2_kg.7__1302__AT4G28880.1 Length=1680 Score = 1724 bits (933), Expect = 0.0 Identities = 1196/1323 (90%), Gaps = 17/1323 (1%) Strand=Plus/Plus Query 16 CCCTAAATTGATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGTGATCGGAGCTGC 75 |||||||| ||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct 35 CCCTAAATCCTTATCTCTAT-CATTGCGCATGATCCAGATTCGTTTTTGATCGGAGCTGC 93 Query 76 CATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGGCGGTGGTTCCTT 135 ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||| Sbjct 94 CATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATCGGCGGTGGTT-CTT 152 Query 136 T-GGAGAGATTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAGCTGTTAAGATCG 194 | ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 153 TCGGAGAGATTTTTCTAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTAAGATCG 212 Query 195 AGAACAGTAAAACAAAACATCCTCAGCTTCTCTATGAAGCTAAGCTATATAGAACTCTTG 254 |||||||||||||||| ||||| || |||||||||||||| ||||||||||||| ||||| Sbjct 213 AGAACAGTAAAACAAAGCATCCCCAACTTCTCTATGAAGCCAAGCTATATAGAATTCTTG 272 Query 255 AAGGAGGAAGTGGAATTCCGCGCATAAGATGGTTTGGAGTTGATGGAACAGAGAATGCTT 314 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 273 AAGGAGGAAGTGGAATTCCGCGCATAAAATGGTTTGGAGTGGATGGAACAGAGAATGCTT 332 Query 315 TAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGAAAAT 374 |||||||||||||||| || ||||||||||||||||| ||||| || |||||||| |||| Sbjct 333 TAGTGATGGATTTGCTAGGGCCAAGTCTCGAAGATCTATTCGTGTATTGTGGGAGGAAAT 392 Query 375 TTTCACCAAAGACGGTCTTGATGTTGGCTGATCAAATGCTAACTAGAATAGAATATGTAC 434 | ||||| ||||| |||||||||||||||||||||||||| || |||||||||| ||||| Sbjct 393 TCTCACCTAAGACAGTCTTGATGTTGGCTGATCAAATGCTGACAAGAATAGAATTTGTAC 452 Query 435 ATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATAACTTTCTCATGGGCCTAGGCC 494 |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| | Sbjct 453 ATTCCAAAGGATATCTGCATAGAGATATCAAACCTGATAACTTCCTCATGGGCCTAGGTC 512 Query 495 GCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGGCCAAAAGATATCGTGATGCCA 554 | ||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct 513 GGAAAGCAAATCAGGTTTATCTAATTGACTTCGGACTTGCTAAAAGATATCGTGATGCCA 572 Query 555 ACACCAACCGCCACATCCCTTATAGGGAAAACAAGAATTTAACAGGAACTGCACGATATG 614 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 573 ACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATTTAACAGGAACTGCACGATATG 632 Query 615 CAAGTTGCAATACACATCTTGGTATTGAGCAAGGTAGACGGGATGACCTAGAGTCTCTTG 674 | || ||||||||||||||||| ||||||||| || |||||||||||||||| || || | Sbjct 633 CTAGCTGCAATACACATCTTGGAATTGAGCAAAGTCGACGGGATGACCTAGAATCGCTGG 692 Query 675 GATATGTGCTTCTGTACTTCTTAAGAGGAAGCCTTCCATGGCAGGGTCTTAAGGCTGTTG 734 |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| Sbjct 693 GATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCATGGCAGGGTCTTAAGGCTGTTG 752 Query 735 ACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGATATCAACTCCTATTGAGGTTC 794 ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 753 ACAAGAAGCAAAAATATGATAAAATCTGTGAGAAGAAGATATCAACTCCTATTGAGGTTC 812 Query 795 TATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTCATTATTGCCACACACTGACAT 854 ||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 813 TATGCAAAAATCACCCTGTGGAGTTTGCTTCATATTTTCATTACTGCCATACACTGACAT 872 Query 855 TTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTCTCACGGG 914 ||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||| Sbjct 873 TTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTTTCGCGGG 932 Query 915 AAGGATATGAGTTTGACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGA 974 ||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||| Sbjct 933 AAGGATATGAGTTCGACTATATATTTGACTGGACTATTATAAAGTATCAACAAGCACAGA 992 Query 975 AAACTAGAAGTCAGTCTCAGGCCGTTCCTGGGTCTAGTAATGCTCGTGCAATACCAATGG 1034 || |||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 993 AATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGTAATGCTCGTGCAATGCCAATGG 1052 Query 1035 ACACAAGCAATCATCGAGGAGGAACTAAGATTTCACATGAAGCCCAAGTCTCTGACCGTG 1094 |||||||||||||||| |||||| | || ||||| |||||||| | | |||||| || | Sbjct 1053 ACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATGAAGCCGAGGCCTCTGAACGCG 1112 Query 1095 TCAGACCGGCTAATGCCAGTGGTCCA-AGCCCACAGATTAATACCGCTGTAGGGAGGAGT 1153 ||||| | |||||||||| ||| ||| || | | | |||||| |||| ||| |||| | Sbjct 1113 TCAGATCAGCTAATGCCATTGGCCCACAGATAA-ATAATAATACTGCTGCAGGAAGGACT 1171 Query 1154 CTGGGTTTTGATCAA---GTCCACAAGAATATGAACATGCCATCATCCACTTCATTATCT 1210 ||||| |||||||| |||||||||||||||||||||||||| | |||||| ||||| Sbjct 1172 CTGGGGTTTGATCACCCTGTCCACAAGAATATGAACATGCCATC--C-ACTTCAGTATCT 1228 Query 1211 CCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCTCAAATTCTGGGTTTGGGAGC 1270 ||||||||||||||||||||||||||| |||| || | ||||||||||||| |||||| Sbjct 1229 CCTGCGGGTACCTCAAAAAGAAATGTCGGACCTGAGATCTCAAATTCTGGGCATGGGAGT 1288 Query 1271 GGGAATAAAACCGGCGGTTGGACTTCAC-CATTCATGTCACCGGGGAAATGATGCaaa-a 1328 ||||||| ||||||| | ||||||| | |||||||||| || | ||||||||||||| | Sbjct 1289 GGGAATAGAACCGGC--T-GGACTTC-CTCATTCATGTCTCCAGAGAAATGATGCAAAGA 1344 Query 1329 aaa 1331 ||| Sbjct 1345 AAA 1347 > Ahg491871 jgi|Araly1|491871|fgenesh2_kg.7__1304__AT4G28860.2 Length=1381 Score = 1402 bits (759), Expect = 0.0 Identities = 928/1007 (92%), Gaps = 21/1007 (2%) Strand=Plus/Plus Query 194 GAGAACAGTAAAACAAAACATCCTCAGCTTCTCTATGAAGCT-AAGCTATATAGAACTCT 252 ||||||||||||||||| |||||||| ||||||||||||| | |||||||| |||| ||| Sbjct 232 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAG-TCAAGCTATACAGAATTCT 290 Query 253 TG-A--AGG-A-G--G------A------AGTGGAATTCCGCGCATAAGATGGTTTGGAG 293 || | ||| | | | | ||||||||||||||||| ||||||||||||| Sbjct 291 TGAAGGAGGAAGGATGCTTCTCATTCTCTAGTGGAATTCCGCGCATGAGATGGTTTGGAG 350 Query 294 TTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTT 353 ||||||||||||| |||||| |||||||||||||| | || ||||||||||||||||| | Sbjct 351 TTGATGGAACAGAAAATGCTCTAGTGATGGATTTGTTAGGGCCAAGTCTCGAAGATCTAT 410 Query 354 TCGTCTACTGTGGGAGAAAATTTTCACCAAAGACGGTCTTGATGTTGGCTGATCAAATGC 413 |||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 411 TCGTATATTGTGGGAGGAAATTTTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 470 Query 414 TAACTAGAATAGAATATGTACATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATA 473 | || |||||||||| |||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 471 TGACAAGAATAGAATTTGTACATTCCAAAGGATACCTGCACAGAGATATCAAACCAGATA 530 Query 474 ACTTTCTCATGGGCCTAGGCCGCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGG 533 |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| | Sbjct 531 ACTTTCTCATGGGCCTTGGCCGGAAAGCGAATCAGGTTTATCTGATTGACTTTGGACTTG 590 Query 534 CCAAAAGATATCGTGATGCCAACACCAACCGCCACATCCCTTATAGGGAAAACAAGAATT 593 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 591 CCAAAAGATATCGTGATGCCAGCACCAACCGCCACATCCCGTATAGGGAAAACAAGAATT 650 Query 594 TAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGTATTGAGCAAGGTAGAC 653 | |||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| Sbjct 651 TGACAGGAACTGCACGGTATGCAAGTTGCAATACACATCTTGGTATTGAGCAAAGTCGAC 710 Query 654 GGGATGACCTAGAGTCTCTTGGATATGTGCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 713 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 711 GGGATGACCTAGAGTCTCTTGGATATGTCCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 770 Query 714 GGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGA 773 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 771 GGCAGGGTCTTAAGGCGGTTGACAAGAAGCAAAAATATGACAAAATTTGTGAAAAGAAGA 830 Query 774 TATCAACTCCTATTGAGGTTCTATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTC 833 |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 831 TATCAACTCCGATTGGGGTTCTATGCAAAAACCACCCCGTGGAGTTTGCTTCATATTTTC 890 Query 834 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTT 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 891 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCTGCTTT 950 Query 894 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTATATATATGACTGGACTATTA 953 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 951 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTTTATATATGACTGGACTATTA 1010 Query 954 TAAAGTATCAGCAATCACAGAAAACTAGAAGTCAGTCTCAGGCCGTTCCTGGGTCTAGTA 1013 |||||||||||||| |||||||||||| || || ||||||||| |||||||||||||||| Sbjct 1011 TAAAGTATCAGCAAGCACAGAAAACTAAAAATCTGTCTCAGGCAGTTCCTGGGTCTAGTA 1070 Query 1014 ATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGAGGAACTAAGATTTCACATG 1073 ||| ||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct 1071 ATGTTCGTGCAATGCCAATGGATACAAGTAATCATCGAGGAGGAACTAATATTTCACATG 1130 Query 1074 AAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTA 1133 |||| ||||||||||||||||||||| | |||||||||| |||||| |||||||||||| Sbjct 1131 AAGCACAAGTCTCTGACCGTGTCAGAACTGCTAATGCCAATGGTCCCCGCCCACAGATTA 1190 Query 1134 ATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT 1180 |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1191 ATACCGCTACAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT 1237 Score = 279 bits (151), Expect = 3e-74 Identities = 178/191 (93%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 4 GAAGTAAAAAAGCCCTAAATTGATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGT 63 |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAGCAAAATAGCCCTAAATTCATATCTCTATCCCTTGCGCATGATCCAGATTCGGTTGT 60 Query 64 GATCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGG 123 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 GATCGGAGCTACCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATTGG 120 Query 124 CGGTGGTTCCTTTGGAGAGA-TTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAG 182 ||||| ||| |||||||| | ||||| | |||| |||| ||||||||||||||||||||| Sbjct 121 CGGTGTTTCATTTGGAGAAAATTTTC-TGGCTATGCACGTCGATACCTTCGAGATTGTAG 179 Query 183 CTGTTAAGATC 193 ||||||||||| Sbjct 180 CTGTTAAGATC 190 > Ahg945884 jgi|Araly1|945884|scaffold_702113.1 Length=389 Score = 274 bits (148), Expect = 2e-72 Identities = 176/189 (93%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 9 AAAAAAGCCCTAAATTGATATCTCTATCCCTTGCGC---ATGATCCAGATTCGGTTGTGA 65 |||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||| Sbjct 83 AAAAAAACCCTAAATTTATATATCTATCCCTTGCGCATGATGATCCAGATTCGGTTGTGA 142 Query 66 TCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATTGGCG 125 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 143 TCGGAGCTGCCATGGAACGTATCATCGGCGGCAAGTACAAGCTAGGACGGAAGATTGGCT 202 Query 126 GTGGTTCCTTTGGAGAGATTTTCCTAGCTACGCACATCGATACCTTCGAGATTGTAGCTG 185 |||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||| Sbjct 203 GTGGTTCCTTTGGAGAAATTTTTTTCGCTACACACATCGATACCTTCGAGATTGTAGCTG 262 Query 186 TTAAGATCG 194 ||||||||| Sbjct 263 TTAAGATCG 271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62544182290 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5