BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28880.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491869 jgi|Araly1|491869|fgenesh2_kg.7__1302__AT4G28880.1 2645 0.0
Ahg491871 jgi|Araly1|491871|fgenesh2_kg.7__1304__AT4G28860.2 1173 0.0
> Ahg491869 jgi|Araly1|491869|fgenesh2_kg.7__1302__AT4G28880.1
Length=1680
Score = 2645 bits (1432), Expect = 0.0
Identities = 1592/1668 (95%), Gaps = 16/1668 (1%)
Strand=Plus/Plus
Query 68 TAAACAACAACCCTAAATCCTTATCTCTATCCTTGCGCTTGATCCAGATTCGGTTCTGAT 127
||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||
Sbjct 25 TAAACAACAACCCTAAATCCTTATCTCTATCATTGCGCATGATCCAGATTCGTTTTTGAT 84
Query 128 TGGAGCTGCCATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATCGGCGG 187
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 85 CGGAGCTGCCATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGCCGGAAGATCGGCGG 144
Query 188 TGGTTCGTTCGGAGAGATTTTTCTAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGT 247
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TGGTTCTTTCGGAGAGATTTTTCTAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGT 204
Query 248 TAAGATCGAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCTAAGCTATATAG 307
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 205 TAAGATCGAGAACAGTAAAACAAAGCATCCCCAACTTCTCTATGAAGCCAAGCTATATAG 264
Query 308 AATTCTTGAAGGAGGAAGTGGAATTCCGCGCATAAAATGGTTTGGAGTTGATGGAACAGA 367
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 265 AATTCTTGAAGGAGGAAGTGGAATTCCGCGCATAAAATGGTTTGGAGTGGATGGAACAGA 324
Query 368 GAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGG 427
|||||||||||||||||||||||| || ||||||||||||||||| ||||| || |||||
Sbjct 325 GAATGCTTTAGTGATGGATTTGCTAGGGCCAAGTCTCGAAGATCTATTCGTGTATTGTGG 384
Query 428 GAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGCTAACAAGAATAGA 487
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 385 GAGGAAATTCTCACCTAAGACAGTCTTGATGTTGGCTGATCAAATGCTGACAAGAATAGA 444
Query 488 ATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGATAACTTCCTCATGGG 547
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 445 ATTTGTACATTCCAAAGGATATCTGCATAGAGATATCAAACCTGATAACTTCCTCATGGG 504
Query 548 CCTAGGTCGGAAAGCAAATCAGGTTTATCTAATTGACTTTGGACTTGCCAAAAGATATCG 607
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 505 CCTAGGTCGGAAAGCAAATCAGGTTTATCTAATTGACTTCGGACTTGCTAAAAGATATCG 564
Query 608 GGATGCCAACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATTTAACAGGAACTGC 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TGATGCCAACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATTTAACAGGAACTGC 624
Query 668 ACGATATGCAAGTTGCAATACACATCTTGGAATTGAGCAAAGTCGACGGGATGATCTAGA 727
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 625 ACGATATGCTAGCTGCAATACACATCTTGGAATTGAGCAAAGTCGACGGGATGACCTAGA 684
Query 728 ATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCATGGCAGGGTCTTAA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 ATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCATGGCAGGGTCTTAA 744
Query 788 GGCTGTTGACAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAGATATCAACTCCCAT 847
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 745 GGCTGTTGACAAGAAGCAAAAATATGATAAAATCTGTGAGAAGAAGATATCAACTCCTAT 804
Query 848 TGAGGTGCTATGCAAAAATCACCCTGTGGAGTTTGCATCATATTTTCATTACTGCCATAC 907
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 805 TGAGGTTCTATGCAAAAATCACCCTGTGGAGTTTGCTTCATATTTTCATTACTGCCATAC 864
Query 908 ACTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATT 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ACTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATT 924
Query 968 TTCGCGGGAAGGATATGAGTTCGACTATATATTTGACTGGACTATCATAAAGTATCAACA 1027
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 925 TTCGCGGGAAGGATATGAGTTCGACTATATATTTGACTGGACTATTATAAAGTATCAACA 984
Query 1028 AGCACAGAAATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGCAATCCTCGTGCAAT 1087
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 985 AGCACAGAAATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGTAATGCTCGTGCAAT 1044
Query 1088 GCCAGTGGACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATGAAGCCGAGGCCTC 1147
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GCCAATGGACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATGAAGCCGAGGCCTC 1104
Query 1148 TGAACGCGTCAGATCGGCTAATGCCATTGGTCCAAGCCCACAGATAAATAATAATACTGC 1207
||||||||||||||| |||||||||||||| || | |||||||||||||||||||||
Sbjct 1105 TGAACGCGTCAGATCAGCTAATGCCATTGG-CC---C--ACAGATAAATAATAATACTGC 1158
Query 1208 TGCAGGGAGGACTCCGGGGTTTGATCACCCTGTCCACAAGAATATGAACATGCCATCCAC 1267
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TGCAGGAAGGACTCTGGGGTTTGATCACCCTGTCCACAAGAATATGAACATGCCATCCAC 1218
Query 1268 TTCATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCGGACCCGAAACCTCAAATTCTGG 1327
|||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1219 TTCAGTATCTCCTGCGGGTACCTCAAAAAGAAATGTCGGACCTGAGATCTCAAATTCTGG 1278
Query 1328 ATATGGGAGTGGGAATAGAACTGGTTGGACTTCGTCATTCATGTCTCCAGAGAAATGATG 1387
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1279 GCATGGGAGTGGGAATAGAACCGGCTGGACTTCCTCATTCATGTCTCCAGAGAAATGATG 1338
Query 1388 CAAAGAAAATGTAGCTTTTTCCTGAAATGGTGAGTGAGATGATGCGCTGTTAATGTGACT 1447
|||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||
Sbjct 1339 CAAAGAAAATGTAGCTTTATCCTGAAACGGTGAGTGAGATTATGCGCTGTTACTGTGAGG 1398
Query 1448 CCGTGCCCTTAATT-CACCTCTGAAACTACAGCAGAAATCAGAACTTGGTGTCACTAACA 1506
| ||| |||| || |||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1399 CA-TGCTCTTA-TTGCACCTCTGCAACTACAGCAGAAATCAGAACTCGGTGTCACTAACA 1456
Query 1507 CCTTTGTATCTCCTCCACCTTTGGCTGGAAGAAAGATGCAA-TGGTTTCTATGTAAATTC 1565
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1457 CCTTTGTATCTCCTCCACCTTTGGCTGGAAGAAAAATGCAAATGGTTTCTATGTAAATTC 1516
Query 1566 TCTGAAGTGTGTGTGGACAAGAAGGCGTTGGTTGAAGCATTTGTGTTTACACACACAAGA 1625
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 TCTGAAGTGTGTG-G-ACAAGAAGGCGTTGGTTGAAGCATTTGTGTTTACACACACAAGA 1574
Query 1626 CATGAAAGTGTATGTGTGCTTTT-CATTCAAAGATTTCCCCCAACCTTTGTATAATTCTT 1684
|||||| |||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 1575 CATGAA-GTGTATGTTTGCTTTTTCATTCAA-GATTTTCCCCAACCTTTGTATAATTCTT 1632
Query 1685 ACACCCGGATGTGTAATC-TTGTTATGTGATTCATACATATCATTTTT 1731
|||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1633 ACACCCGGATGTGTAATCGTTGTTATGTGATTCATATATATCATTTTT 1680
> Ahg491871 jgi|Araly1|491871|fgenesh2_kg.7__1304__AT4G28860.2
Length=1381
Score = 1173 bits (635), Expect = 0.0
Identities = 895/1017 (88%), Gaps = 32/1017 (3%)
Strand=Plus/Plus
Query 255 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCT-AAGCTATATAGAATTCT 313
|||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 232 GAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAG-TCAAGCTATACAGAATTCT 290
Query 314 TG-A--AGG-A-G--G------A------AGTGGAATTCCGCGCATAAAATGGTTTGGAG 354
|| | ||| | | | | ||||||||||||||||| | |||||||||||
Sbjct 291 TGAAGGAGGAAGGATGCTTCTCATTCTCTAGTGGAATTCCGCGCATGAGATGGTTTGGAG 350
Query 355 TTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTT 414
||||||||||||| |||||| |||||||||||||| | || ||||||||||||||||| |
Sbjct 351 TTGATGGAACAGAAAATGCTCTAGTGATGGATTTGTTAGGGCCAAGTCTCGAAGATCTAT 410
Query 415 TCGTCTACTGTGGGAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 474
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 411 TCGTATATTGTGGGAGGAAATTTTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGC 470
Query 475 TAACAAGAATAGAATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGATA 534
| ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||
Sbjct 471 TGACAAGAATAGAATTTGTACATTCCAAAGGATACCTGCACAGAGATATCAAACCAGATA 530
Query 535 ACTTCCTCATGGGCCTAGGTCGGAAAGCAAATCAGGTTTATCTAATTGACTTTGGACTTG 594
|||| ||||||||||| || |||||||| |||||||||||||| ||||||||||||||||
Sbjct 531 ACTTTCTCATGGGCCTTGGCCGGAAAGCGAATCAGGTTTATCTGATTGACTTTGGACTTG 590
Query 595 CCAAAAGATATCGGGATGCCAACACCAACCGCCACATCCCTTACAGGGAAAACAAGAATT 654
||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 591 CCAAAAGATATCGTGATGCCAGCACCAACCGCCACATCCCGTATAGGGAAAACAAGAATT 650
Query 655 TAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTGGAATTGAGCAAAGTCGAC 714
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 651 TGACAGGAACTGCACGGTATGCAAGTTGCAATACACATCTTGGTATTGAGCAAAGTCGAC 710
Query 715 GGGATGATCTAGAATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGTCTTCCAT 774
||||||| ||||| || || |||||||| |||||||| ||| |||||||||| |||||||
Sbjct 711 GGGATGACCTAGAGTCTCTTGGATATGTCCTTCTGTACTTCTTAAGAGGAAGCCTTCCAT 770
Query 775 GGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAGA 834
|||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 771 GGCAGGGTCTTAAGGCGGTTGACAAGAAGCAAAAATATGACAAAATTTGTGAAAAGAAGA 830
Query 835 TATCAACTCCCATTGAGGTGCTATGCAAAAATCACCCTGTGGAGTTTGCATCATATTTTC 894
|||||||||| |||| ||| ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 831 TATCAACTCCGATTGGGGTTCTATGCAAAAACCACCCCGTGGAGTTTGCTTCATATTTTC 890
Query 895 ATTACTGCCATACACTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTT 954
|||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 891 ATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCTGCTTT 950
Query 955 TTCGTGATTTATTTTCGCGGGAAGGATATGAGTTCGACTATATATTTGACTGGACTATCA 1014
||||||||||||| || ||||||||||||||||| |||| ||||| |||||||||||| |
Sbjct 951 TTCGTGATTTATTCTCACGGGAAGGATATGAGTTTGACTTTATATATGACTGGACTATTA 1010
Query 1015 TAAAGTATCAACAAGCACAGAAATCTAGAAATCAGTCTCAGGCAGTTCCTGGGTCTAGCA 1074
|||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||| |
Sbjct 1011 TAAAGTATCAGCAAGCACAGAAAACTAAAAATCTGTCTCAGGCAGTTCCTGGGTCTAGTA 1070
Query 1075 ATCCTCGTGCAATGCCAGTGGACACAAGCAATCATCGGGGAGGACCAAATATTTCTTATG 1134
|| ||||||||||||| |||| ||||| |||||||| |||||| | |||||||| |||
Sbjct 1071 ATGTTCGTGCAATGCCAATGGATACAAGTAATCATCGAGGAGGAACTAATATTTCACATG 1130
Query 1135 AAGC-CGAGGCCTCTGAACGCGTCAGATCGGCTAATGCCATTGGTCCAAGCCCACAGATA 1193
|||| | || | ||||| || |||||| | |||||||||| |||||| ||||||||||
Sbjct 1131 AAGCACAAGTC-TCTGACCGTGTCAGAACTGCTAATGCCAATGGTCCCCGCCCACAGAT- 1188
Query 1194 AATAATAATACTGCTGCAGGGAGGACTCCGGGGTTTGATCACCCTGTCCACAAGAAT 1250
||||| | ||| ||||||||| || ||| |||||||| ||||||||||||
Sbjct 1189 --TAATAC--C-GCTACAGGGAGGAGTCTGGGTTTTGATCAA---GTCCACAAGAAT 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5