BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28890.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491868 jgi|Araly1|491868|fgenesh2_kg.7__1301__AT4G28890.1 1964 0.0
> Ahg491868 jgi|Araly1|491868|fgenesh2_kg.7__1301__AT4G28890.1
Length=1308
Score = 1964 bits (1063), Expect = 0.0
Identities = 1232/1312 (94%), Gaps = 17/1312 (1%)
Strand=Plus/Plus
Query 1 ATGTATCAAATCTTCTTTTTCTTTCTTCCTCTCCTCCACAGTT------ATGCCTCTGCC 54
||||||||||||||||| ||||||||||| ||||||||||||| ||| || |||
Sbjct 1 ATGTATCAAATCTTCTTCTTCTTTCTTCCACTCCTCCACAGTTACCCCCATGTCTATGCT 60
Query 55 CAGACTCCTCCTCCGTTCAGAAACGGTGACCTCGTCGCAAATTTTGAGCCGAGTTTAGCC 114
||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 CAGCCTCCTCCTCCGTTCAGAAACGGTGACCTCGTCGCCAATTTCGAGCCGAGTTTAGCC 120
Query 115 GTCGTCACCGGAGTTCTCGCCATCATGTTCGCACTCACTTTCGTCCTCCTCGTCTACGCT 174
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GTCGTCACCGGAGTTCTCGCTATCATGTTCGCACTCACGTTCGTCCTCCTCGTCTACGCT 180
Query 175 AAGTGCTGCCACATCGATCTCCGATCAGGTTCCGGCGACAGAAGAAGGCACGATCGCCGG 234
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||
Sbjct 181 AAGTGCTGCCACATCGATCTCCGATCAGATTCTGGCGACAGAAGAAGGCATGATCGTCGG 240
Query 235 CTCAGACAAGGAATATTCTTTAACCGGTCAACGGCATCATCGGATCGATTCTCTGGTTTA 294
||| | ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 241 CTCCGCCAAGGAATATTCTTTAACCGGTCAACGACTTCATCGGATCGATTCTCCGGTTTA 300
Query 295 GACAAAACAGCAATCGAGTCTCTTCCTCTGTTTAGATTCTCTGCTTTGAAAGGATCAAAA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACAAAACAGCAATCGAGTCTCTTCCTCTGTTTAGATTCTCTGCTTTGAAAGGATCAAAA 360
Query 355 CAAGGTCTTGATTGTTCTGTCTGTTTGTCTAAATTCGAAAGTGTTGAGATTCTTAGATTG 414
||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 361 CAAGGGCTTGATTGTTCTGTTTGTTTGTCTAAATTCGAAAGTATTGAGATTCTTAGATTG 420
Query 415 TTGCCTAAGTGTAGACACGCTTTCCACATCGGATGTATCGATCAGTGGCTTGAGCAACAC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGCCTAAGTGTAGACACGCTTTCCACATCGGATGTATCGATCAGTGGCTTGAGCAACAC 480
Query 475 GCAACTTGTCCTCTTTGCAGAGATAGAGTCTCAATGGAAGAAGATTCCTCTGTTCTCACT 534
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 481 GCAACGTGTCCTCTCTGCAGAGATAGAGTCTCCATGGAAGAAGATTCCTCTGTTTTCTCT 540
Query 535 AACGGAAACAGTTTCAGGTTCTTGAATCAGTCTGAGATTAGAGAAGATTCGAGCTTGGAG 594
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACGGAAATAGTTTCAGGTTCTTGAATCAGTCTGAGATTAGAGAAGATTCGAGCTTGGAG 600
Query 595 CTTTACATCgagagagaagaagaagaagaaagaatacacagagaagaaCTTAGTGGGTCG 654
|||||||| |||||||||||||||||||| |||| ||| ||||| |||||| ||||||||
Sbjct 601 CTTTACATAGAGAGAGAAGAAGAAGAAGATAGAAGACAGAGAGACGAACTTGGTGGGTCG 660
Query 655 TCGAGATTCAGCATCGGAGAGAGTTTCCGGAAGATTCTGAAATTAGGTAATAAAGAAAAA 714
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 TCGAGATTTAGCATCGGAGAGAGTTTTAGGAAGATTCTGAAATTAGGTAATAAAGAAAAA 720
Query 715 ACGTTACTTGATGAACACGTGAAC-G--ATAAAGATGAGAAGAAGCTTATGCACAAGTTC 771
||||||||||||||||||| |||| | ||||||| ||||||||||||||||| ||||||
Sbjct 721 ACGTTACTTGATGAACACGGGAACAGCGATAAAGACGAGAAGAAGCTTATGCATAAGTTC 780
Query 772 AATCATAGGATCGTTGTGTCGGATGTTGTTTTCAAGAATCGTTGGAGCAACGTGAGTTCA 831
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 AATCATAGGATCGTTGTGTCGGATGTTGTTTTTAAGAATCGTTGGAGCAACGTGAGTTCG 840
Query 832 TCAGATTTGATGTTTTTGAATTCCGAGATGGTTAATTCGATTTCTAGCGAGAGATTTTCT 891
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 841 TCTGATTTGATGTTTTTGAATTCAGAGATGGTTAATTCGATTTCTAGTGAGAGATTTT-T 899
Query 892 -TC-ATTGGATC-ATGTGAAGAGAGGAGATGAAGAGGATCAGATAGGTATCTTGCGAATC 948
|| |||| ||| | | ||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 900 GTCGATTG-ATCGA-GCGAAGAGAGGGGATGAAGAGGACCAGATAGGTATCTTGCGGATC 957
Query 949 AAGGAAGAGATGGAAGCGAAGAGAATGTTGGAGAACAAGTTAACTTCGATGACAACTATG 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 AAGGAAGAGATGGAAGCGAAGAGAATGTTGGAGAACAAGTTAACTTCGATGAAAACTATG 1017
Query 1009 TTTTC-CTCGGAAAACGGAGACTCTGGTTCGAAATCAAGAAGCGTTATGATCGAACCAGG 1067
||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1018 TTTTCGC-CGGAAAACGGAGACTCTGGTTCGAAATCTAGAAGTGTTATGATCGAACCGGG 1076
Query 1068 ACGAAGATCGGTGTCTGACATCACTGCGGTTCCTAGACTCAGTATATCGATTCATGGAGA 1127
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1077 ACGAAGATCGGTGTCTGATATCACTGCGGTTCCTAGACTCAGTATATCGGTTCATAGAGA 1136
Query 1128 TTGCAGCGGTTCAGCCGCAGAGACTGCGTCTGCGTTACAAAACGGTGGGAATGAGACGGA 1187
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1137 TTGCAGCGGTTCAGCCGCAGGGACTGCGTCTGCGTTACAAAACGGTGGAAATGAGACGGA 1196
Query 1188 GGAGAGAAGACGGCGTTTGTGGCTGCCGATCGCTAGAAAAACTGCTCAATGGTTTGCTAA 1247
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 GGAGAGAAGACGGCGTTTATGGCTGCCGATCGCTAGAAAAACCGCTCAATGGTTTGCTAA 1256
Query 1248 CAGAGAAAAAAGAAGTCAAATTAACACAACACACCAACACTTTGATGtttag 1299
|||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1257 CAGAGAAAAAAGAAATCAAATTAACACGACACACCAACACTTTGATGTATAG 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5