BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28910.2
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491865 jgi|Araly1|491865|fgenesh2_kg.7__1298__AT4G28910.2 2209 0.0
> Ahg491865 jgi|Araly1|491865|fgenesh2_kg.7__1298__AT4G28910.2
Length=1709
Score = 2209 bits (1196), Expect = 0.0
Identities = 1478/1610 (92%), Gaps = 35/1610 (2%)
Strand=Plus/Plus
Query 164 CGCTGCGAAGAAGCTCTAGGG------TT-TGTTCGTCTTCTTCCTCGGT--TTCATCAG 214
||| ||||||||||||||||| || || ||||||||||||||||| || ||||
Sbjct 86 CGCCGCGAAGAAGCTCTAGGGTTTTTCTTCTGATCGTCTTCTTCCTCGGTGGTT--TCAG 143
Query 215 AACTCAAAAGGTACT-TGGTAGGAGCGAGAAGAAAGTTTCT-GGAGAATTGCTGAATTGT 272
||||| | |||| | | ||| ||||||||| | |||| ||| |||||||| |||||
Sbjct 144 AACTCTATAGGT-GTATCATAGAAGCGAGAAGGCGGATTCTGGGA-AATTGCTGGATTGT 201
Query 273 TTCTTTCAATGGTTTTGTTTCTAAGATGGTAAT-CAAGATTGT-TGACGGTGCTCTGAAG 330
|||||||||||||||||||||||| | ||| | || || | ||| ||| |||| |||
Sbjct 202 GTCTTTCAATGGTTTTGTTTCTAAGGT-ACAATCCGAGGTT-TCTGAGGGTACTCTTAAG 259
Query 331 ATCTGTTGACCTGCTCAGAGTTTGCTTAAAAAGTTTGAGA-AAAAATGGACGATGATAAT 389
||| ||||| |||||||| |||||||| ||||||||||| ||||||||| |||||||||
Sbjct 260 ATCCGTTGAGCTGCTCAGTGTTTGCTT-TAAAGTTTGAGAGAAAAATGGAGGATGATAAT 318
Query 390 GGGCTCGAGCTCAGCTTGGGTCTTTCTTGTGGAGGATCAACAGGAAAAGCTAAGGGTAAC 449
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 319 GGGCTCGAGCTCAGCTTGGGTCTTTCTTGTGGAGGATCATCAGGAAAAGCTAAGGGTAAC 378
Query 450 AATAATAATAATGCTGGAAGCTCCTCAGAGAACTACAGGGCAGAAGGAGGCGATAGAAGT 509
|||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 379 AATACTAATAATGCTGGAAGCTCCTCAGAGAACCACAGGGCAGAAGGAGGTGATAGAAGC 438
Query 510 GCTAAAGTGATTGATGACTTTAAGAACTTCCTGCATCCAACTTCTCAAAGACCTGCAGAG 569
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 439 GCTAAAGTGATTGATGACTTTAAGAATTTCCTGCATCCAACTTCTCAAAGACCTGCAGAG 498
Query 570 CCGAGTTCTGGTTCTCAGAGAAGTGATTCGGGTCAACAGCCTCCA-CAAAATTTCTTCAA 628
||||||||||||||||||||||| |||||||||||||| ||| || || |||||||||||
Sbjct 499 CCGAGTTCTGGTTCTCAGAGAAGCGATTCGGGTCAACAACCT-CAGCAGAATTTCTTCAA 557
Query 629 TGACCTCTCAAAAGCTCCTA-CAACTGA-GGCTGAAGCTTCTACGAAACCTTTGTGGGTG 686
|||||||||||||||||||| | ||||| || ||||||||| |||||| |||||||||||
Sbjct 558 TGACCTCTCAAAAGCTCCTATC-ACTGACGG-TGAAGCTTCCACGAAATCTTTGTGGGTG 615
Query 687 GAGGATGAGTCACGGAAAGAAGCAGGGAACAAAAGAAAGTTCGGGTTCCCGGGGATGAAT 746
||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 616 GAGGATGAGACACGGAAAGAAGCTGGAAACAAAAGAAAGTTTGGGTTCCCGGGGATGAAT 675
Query 747 GATGATAAGAAAAAAGAGAAGGACTCGTCTCATGTTGATATGCATGAGAAGAAGACAAAA 806
||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 676 GATGAAAAGAAGAAAGACAAGGACTCGTCACATGTTGATATGCATGAGAAGAAGACAAAA 735
Query 807 GCATCCCATGTTTCAACTGCGACAGATGAAGGATCAACAGCTGAAAACGAAGATGTAGCA 866
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 736 GCATCCCATGTTTCAACCGCGACAGATGAAGGATCAACAGCTGATAACGAAGATGTAGCA 795
Query 867 GAGTCTGAAGTAGGTGGTGGTTCTTCTTCCAACCACGCAAAGGAGGTGGTTCGTCCTCCT 926
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GAGTCTGAAGTAGGTGGTGGTTCTTCTTCCAACCACGCAAAGGAGGTGGTTCGTCCTCCC 855
Query 927 ACTGATACAAACATTGTGGACAACTTAACTGGTCAAAGGAGGAGCAACCATGGTGGATCT 986
||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 856 CCTGATACAAACGTTGTGGACAACTTAACCGGTCAAAGAAGGAGCAACCATGGCGGATCT 915
Query 987 GGCACTGAAGAGTTTACAATGCGCAACATGAGTTACACCGTACCTTTCACAGTTCATCCG 1046
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 916 GGCACCGAAGAGTTTACAATGCGCAACATGAGTTACACTGTACCTTTCACGGTTCATCCG 975
Query 1047 CAAAATGTCGTCACTAGTATGCCTTACTCTTTACCGACAAAAGAGTCTGGACAACACGCA 1106
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 976 CAAAATGTCGTCACTACTATGCCTTTCTCTTTACCGACAAAAGAGTCTGGACAACACGAA 1035
Query 1107 GCAGCTACAAGTCTATTGCAGCCTAATGCTAATGCTGGAAATCTCCCGATTATGTTCGGA 1166
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 1036 GCAGCTACAAGTCTATTGCAGCCTAATGCTAGTGCTGGAAATCTCCCAATTATGTTTGGA 1095
Query 1167 TACTCACCAGTCCAGCTCCCTATGCTAGATAAGGACGGTTCAGGAGGGATTGTCGCACTT 1226
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1096 TACTCACCGGTCCAGCTCCCTATGCTAGATAAGGACGGTTCAGGCGGGATTGTCGCCCTT 1155
Query 1227 TCTCAATCTCCATTTGCTGGAAGAGTTCCATCAAACTCAGCTACTGCAAAAGGCGAAGGC 1286
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 1156 TCTCAATCTCCATTTGCTGGAAGAGGTCCATCAAACTCAGCTACTGCGAAAGGCGAGGGC 1215
Query 1287 AAACAACCTGTTGCAGAAGAAGGTTCATCCGAGGATGCATCAGAACGACCAACGGGAGAC 1346
||||| ||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 1216 AAACAGCCTGTTGCAGAAGAAGGTTCATCTGAGGATGCATCAGAGCGGCCAACAGGAGAC 1275
Query 1347 AACAGCAACC-TCAATACCGCTTTCTCTTTCGACTTTTCTGCCATAAAACCTGGAATGGC 1405
|||| |||| | |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1276 AACAACAACAAT-AATACCGCTTTCTCTTTCGACTTTTCCGCCATAAAACCCGGAATGGC 1334
Query 1406 AGCAGATGTGAAGTTTGGAGGATCCGGGGCACGTCCCAACTTACCGTGGGTCTCAACCAC 1465
||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||
Sbjct 1335 TGCAGATGTGAAGTTTGGAGGATCGGGGGCACGTCCTAACCTACCATGGGTCTCAACCAC 1394
Query 1466 TGGTTCAGGCCCACACGGACGGACAATCTCAGGTGTCACATACCGGTACAACGCAAACCA 1525
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1395 TGGTTCAGGCCCGCACGGTCGGACAATCTCAGGTGTCACATACCGGTACAATGCAAACCA 1454
Query 1526 GATCAAAATCGTATGCGCTTGCCACGGCTCGCACATGTCACCGGAGGAGTTTGTACGGCA 1585
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1455 GATCAAAATCGTATGCGCTTGCCACGGCTCGCATATGTCGCCAGAGGAGTTTGTACGGCA 1514
Query 1586 CGCAAGCGAGGAGTACGTTAGCCCAGAATCATCCATGGGAATGACTG-CAGCGTCAGCTC 1644
|||||||||||| | |||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 1515 CGCAAGCGAGGAATTCGTTAGCCCAGAATCATCCATGGGAATGAC-GACCGCGTCAGCTC 1573
Query 1645 ACACCTGAAAAGTCACCACCGGaaaaaaaGATGTCTGAAATCTTGTAAACAAATGGAAGG 1704
||| ||||||| || || |||||||||| ||||||||||| |||||||||||||||||
Sbjct 1574 ACAGCTGAAAATTCGCCGCCGGAAAAAA---TGTCTGAAATCATGTAAACAAATGGAAGG 1630
Query 1705 GTTT-GTAATGAGTTTCTTTTTGGAACATACATTTTATTATGTTTAGTCG 1753
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 GTTTTGTAATGAGTTTCTTTTTGGAACATACATTTTATTATGTTTAGTCG 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5