BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28920.1 Length=879 Score E Sequences producing significant alignments: (Bits) Value Ahg491864 jgi|Araly1|491864|fgenesh2_kg.7__1297__AT4G28920.1 1061 0.0 Ahg945132 jgi|Araly1|945132|scaffold_701361.1 313 2e-84 > Ahg491864 jgi|Araly1|491864|fgenesh2_kg.7__1297__AT4G28920.1 Length=876 Score = 1061 bits (574), Expect = 0.0 Identities = 798/899 (89%), Gaps = 43/899 (5%) Strand=Plus/Plus Query 1 ATGTCGGAGAACGATAGTAGCGAGAGTGA-T---AT--TGAAATGGACCCTGAAGAAGAA 54 ||||||||||||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 1 ATGTCGGAGAACGATAGTAGCGAGAGTGATTGGGATACAGAAATGGACCCTGAAGAAGAA 60 Query 55 AAAGTGTATAGACGGCAAGTTGAAGAGTCCGATGGTTTTGA-TGTTGATTACTTTAGATA 113 || | ||||||||||||||||||||||||||| | |||| || || || || | | | Sbjct 61 AAGGAGTATAGACGGCAAGTTGAAGAGTCCGA---TATTGATTGGTGCTT--TTCA-AAA 114 Query 114 TGCTGGGATAAAGCCCTGTCCATTG--AAAGATGA-G-AATGC--T---TATACTTATGA 164 | |||| | | ||| |||| |||| | | |||| | ||||| ||||| Sbjct 115 T-TTGGGGT--TTCGATGTTGATTGCTTTAGAT-ATGCTATGCTTTAGATATACATATGA 170 Query 165 TATCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTTCTTCACGAGGGAACCAA 224 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 171 CGTCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTCCTTCACAAGGGAACCAA 230 Query 225 CCTCAAACTCATGTGCATTCCCAAGTACAACACTAAT-AACATTGGGGTAAGTTCTGGGG 283 |||||||||| ||||||||||||||||||||||| | |||||| | ||| || | ||| Sbjct 231 CCTCAAACTCTTGTGCATTCCCAAGTACAACACT-CTGGACATTGCGTTAACTTGT-GGG 288 Query 284 ACTACTACTACATAACGTTGGAGGCAATAGACACATACAACAACTCTCCATGCACTTTTC 343 |||||| | |||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 289 --TACTAC--C-TAACGTTGGAGGCAATGGACACACACAACAACTCTCCATGCACTTTTC 343 Query 344 AAACGTACGTAAGTGA-ATGGTATCAAACTTCAGAACATGGATACCTTGTGGTAGAGACA 402 |||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| ||||| Sbjct 344 AAACGTACGTAAGTGAGGTGG-GTCAAACTTCGGAACATGGATACCTTGTCGTACAGACA 402 Query 403 TATATTGCTAGATTAAAAGGTCCTACTGGCCCTCATAATACTTGTATTGGACGTGGGTGG 462 ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 403 AATATTGCCAGATTAAAAGTTCCTACTGGCCCTCATAATACTTCTATTGGACGTGGGTGG 462 Query 463 ATATGGGGATGGGAAGAGGAGGCCATCGATGTTTACTACAAAGGTAAACTGCCTAAGTGG 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 463 ATATGGGGATGGGAAGAGGAGGCCATCGATGTTTACTACAAAGGTAAACTGCCTAAGTGG 522 Query 523 TTGACAAAAGATTTGTTGGCTGCAGCCAAGGATGAATACTATGTGGTGCAAGAATCAGAC 582 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 TTGACAAACGATATGCTGGCTGCAGCCAAGGATGAATACTATGTGGTGCAAGAATCAGA- 581 Query 583 ATT-CTAGAAAATGAGTGGCTTCATCTGTATGCTGAGATTGCATTGTACTCCAACTGGAA 641 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 582 ATTTCTAGAAAATGAGTGGCTTCATCTGTATGCTGAGATTGCATTGTACTCGAACTGGAA 641 Query 642 ATGGCATGCGACTCGGAAGAGCTGTGAAGAGTCGCCGCACTTGAAGCTCAAGGCCAACAA 701 |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| Sbjct 642 ATGGCATGCGACTCGGAAAAGCTGTGAAGAGTCGCCGCACCTGAAGCTCAAGGCCGACAA 701 Query 702 CGCTATCTTCTACATGGGTTTCAAGGGCAGTGGTGATCATCATCCGAGTGGTAAGCATGT 761 ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| | Sbjct 702 TGCTATCTTCTACATGAGTTTCAAGGGCAGTGGTGATCATC--C-GAGTGGTAAGCAT-T 757 Query 762 -CGAGTACCAAACAATAGTACGGAAAGCCATGGATGGAAAACCGGGACACATTCGTCTAG 820 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 758 ACGAGTACCAAGCAATAGTACGGAAAACCATGGATGGAAAACCGGGACACATTCGTCTAG 817 Query 821 AAGTTGACTCTTGGCAAGCCATACCAAGCGATTTAATTGGGGAGGATGAACCGCCCTAG 879 |||||||||||||| ||| ||||||||||||| | |||||||||||| ||||||||||| Sbjct 818 AAGTTGACTCTTGGGAAGGCATACCAAGCGATCTGATTGGGGAGGATAAACCGCCCTAG 876 > Ahg945132 jgi|Araly1|945132|scaffold_701361.1 Length=930 Score = 313 bits (169), Expect = 2e-84 Identities = 481/623 (77%), Gaps = 56/623 (9%) Strand=Plus/Plus Query 34 GAAATGGACCCTGAAGAAGAAAAAGTGTATAGACGGCAAGTTGAAGAGTCCGATGGTTTT 93 ||||| ||||| ||||||| ||| |||| ||| |||||| |||||||||| ||||| Sbjct 55 GAAATAGACCCCGAAGAAGCGCAAGAGTATCTACGCCAAGTTCAAGAGTCCGACGGTTTC 114 Query 94 GATGTTGATTACTTT----A--GATATGCTGGGATAAAGCCCTGTCCATTGAAAGATGAG 147 ||||||||||||||| | ||||||| ||||||| |||| || |||||| |||||| Sbjct 115 GATGTTGATTACTTTCACAATTCATATGCTCGGATAAAACCCTTTCAATTGAATGATGAG 174 Query 148 AATGCTTATACTTATGATATCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTT 207 ||| |||||| |||| |||||||||| ||| ||||||||||||||||||||||||||| Sbjct 175 TATGGTTATACACATGACATCGAACTTTATGGTAGATTGGGACTTCACTGTTACAATCTT 234 Query 208 CTTCACGAGGGAACCAACCTCAAACTCAT-GTGCATTCCCAAGTACAACACTAATAACAT 266 | || ||||||| ||||||||| | || | ||||| ||| ||||||||| | | Sbjct 235 CA-CA--AGGGAACTAACCTCAAATTAATCGA-CATTCACAAATACAACACTGAG----T 286 Query 267 TGGGGTAAGTTCTGGGGACTACTACTACATAACGTTGGAGGCAATAGACACATACAACAA 326 || | || |||| |||||| | |||||||||||||| |||||||||| | ||| Sbjct 287 TGTT-T---TT-TGGG---TACTAC-A--TAACGTTGGAGGCAGTAGACACATATACCAA 335 Query 327 CTCTCCATGCACTTTTCAAACGTACGTAAGTGAATGGTATCAAACTTCAGAACATGGATA 386 ||||||||||||||||||||||| |||| | || |||| |||||| ||||||||||| Sbjct 336 CTCTCCATGCACTTTTCAAACGTGCGTACGGGAG-GGTA--AAACTTGGGAACATGGATA 392 Query 387 CCTTGTGGTAGAGACATATATTGCTAGATTAAAAGGTCCTACTGGCCCTCATAATACTTG 446 | || ||||| | ||| | ||| | ||||||||||| ||| | || | | | ||| Sbjct 393 CTTTATGGTACAAACAGAGATTTCCAGATTAAAAGGGCCT-C-GGAC-T-A-----CTTC 443 Query 447 TATTGGACGTGGGTGGATATGGGGATGGGAAGAGGAGGCCATCGATG-TTTACTACAAAG 505 |||||| | | | ||| ||||| | | | |||| || | |||| ||| ||||||| Sbjct 444 TATTGGGCCTCAGAGGAGATGGGAA-G--ATGAGGTGGT-A--GATGATTT-CTACAAAA 496 Query 506 GT-AAACTGCCTAAGTGGTTGACAAAAGATTTGTTGGCTGCAGCCAAGGAT--G----AA 558 || ||| ||||||| ||||||||||| || | | |||||||| || ||| | || Sbjct 497 GTGAAA-TGCCTAACTGGTTGACAAAGGAGGAGCTAGCTGCAGCTAATGATAAGGGGCAA 555 Query 559 TACTATGTGGTGCAAGAATCAGACATT-CTAGAAAATGAGTGGCTTCATCTGTATGCTGA 617 ||||||| | |||||||||| ||| || |||| |||||| ||||||||||| |||||||| Sbjct 556 TACTATGAGTTGCAAGAATCTGAC-TTACTAGGAAATGAATGGCTTCATCTTTATGCTGA 614 Query 618 GATTGCATTGTACTCCAACTGGA 640 | ||||||||| || ||||||| Sbjct 615 GTTTGCATTGTCCTTGAACTGGA 637 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32556971118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5