BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28920.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491864 jgi|Araly1|491864|fgenesh2_kg.7__1297__AT4G28920.1 1061 0.0
Ahg945132 jgi|Araly1|945132|scaffold_701361.1 313 2e-84
> Ahg491864 jgi|Araly1|491864|fgenesh2_kg.7__1297__AT4G28920.1
Length=876
Score = 1061 bits (574), Expect = 0.0
Identities = 798/899 (89%), Gaps = 43/899 (5%)
Strand=Plus/Plus
Query 1 ATGTCGGAGAACGATAGTAGCGAGAGTGA-T---AT--TGAAATGGACCCTGAAGAAGAA 54
||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1 ATGTCGGAGAACGATAGTAGCGAGAGTGATTGGGATACAGAAATGGACCCTGAAGAAGAA 60
Query 55 AAAGTGTATAGACGGCAAGTTGAAGAGTCCGATGGTTTTGA-TGTTGATTACTTTAGATA 113
|| | ||||||||||||||||||||||||||| | |||| || || || || | | |
Sbjct 61 AAGGAGTATAGACGGCAAGTTGAAGAGTCCGA---TATTGATTGGTGCTT--TTCA-AAA 114
Query 114 TGCTGGGATAAAGCCCTGTCCATTG--AAAGATGA-G-AATGC--T---TATACTTATGA 164
| |||| | | ||| |||| |||| | | |||| | ||||| |||||
Sbjct 115 T-TTGGGGT--TTCGATGTTGATTGCTTTAGAT-ATGCTATGCTTTAGATATACATATGA 170
Query 165 TATCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTTCTTCACGAGGGAACCAA 224
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 171 CGTCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTCCTTCACAAGGGAACCAA 230
Query 225 CCTCAAACTCATGTGCATTCCCAAGTACAACACTAAT-AACATTGGGGTAAGTTCTGGGG 283
|||||||||| ||||||||||||||||||||||| | |||||| | ||| || | |||
Sbjct 231 CCTCAAACTCTTGTGCATTCCCAAGTACAACACT-CTGGACATTGCGTTAACTTGT-GGG 288
Query 284 ACTACTACTACATAACGTTGGAGGCAATAGACACATACAACAACTCTCCATGCACTTTTC 343
|||||| | |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 289 --TACTAC--C-TAACGTTGGAGGCAATGGACACACACAACAACTCTCCATGCACTTTTC 343
Query 344 AAACGTACGTAAGTGA-ATGGTATCAAACTTCAGAACATGGATACCTTGTGGTAGAGACA 402
|||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |||||
Sbjct 344 AAACGTACGTAAGTGAGGTGG-GTCAAACTTCGGAACATGGATACCTTGTCGTACAGACA 402
Query 403 TATATTGCTAGATTAAAAGGTCCTACTGGCCCTCATAATACTTGTATTGGACGTGGGTGG 462
||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 403 AATATTGCCAGATTAAAAGTTCCTACTGGCCCTCATAATACTTCTATTGGACGTGGGTGG 462
Query 463 ATATGGGGATGGGAAGAGGAGGCCATCGATGTTTACTACAAAGGTAAACTGCCTAAGTGG 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ATATGGGGATGGGAAGAGGAGGCCATCGATGTTTACTACAAAGGTAAACTGCCTAAGTGG 522
Query 523 TTGACAAAAGATTTGTTGGCTGCAGCCAAGGATGAATACTATGTGGTGCAAGAATCAGAC 582
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TTGACAAACGATATGCTGGCTGCAGCCAAGGATGAATACTATGTGGTGCAAGAATCAGA- 581
Query 583 ATT-CTAGAAAATGAGTGGCTTCATCTGTATGCTGAGATTGCATTGTACTCCAACTGGAA 641
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 582 ATTTCTAGAAAATGAGTGGCTTCATCTGTATGCTGAGATTGCATTGTACTCGAACTGGAA 641
Query 642 ATGGCATGCGACTCGGAAGAGCTGTGAAGAGTCGCCGCACTTGAAGCTCAAGGCCAACAA 701
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 642 ATGGCATGCGACTCGGAAAAGCTGTGAAGAGTCGCCGCACCTGAAGCTCAAGGCCGACAA 701
Query 702 CGCTATCTTCTACATGGGTTTCAAGGGCAGTGGTGATCATCATCCGAGTGGTAAGCATGT 761
||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |
Sbjct 702 TGCTATCTTCTACATGAGTTTCAAGGGCAGTGGTGATCATC--C-GAGTGGTAAGCAT-T 757
Query 762 -CGAGTACCAAACAATAGTACGGAAAGCCATGGATGGAAAACCGGGACACATTCGTCTAG 820
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 758 ACGAGTACCAAGCAATAGTACGGAAAACCATGGATGGAAAACCGGGACACATTCGTCTAG 817
Query 821 AAGTTGACTCTTGGCAAGCCATACCAAGCGATTTAATTGGGGAGGATGAACCGCCCTAG 879
|||||||||||||| ||| ||||||||||||| | |||||||||||| |||||||||||
Sbjct 818 AAGTTGACTCTTGGGAAGGCATACCAAGCGATCTGATTGGGGAGGATAAACCGCCCTAG 876
> Ahg945132 jgi|Araly1|945132|scaffold_701361.1
Length=930
Score = 313 bits (169), Expect = 2e-84
Identities = 481/623 (77%), Gaps = 56/623 (9%)
Strand=Plus/Plus
Query 34 GAAATGGACCCTGAAGAAGAAAAAGTGTATAGACGGCAAGTTGAAGAGTCCGATGGTTTT 93
||||| ||||| ||||||| ||| |||| ||| |||||| |||||||||| |||||
Sbjct 55 GAAATAGACCCCGAAGAAGCGCAAGAGTATCTACGCCAAGTTCAAGAGTCCGACGGTTTC 114
Query 94 GATGTTGATTACTTT----A--GATATGCTGGGATAAAGCCCTGTCCATTGAAAGATGAG 147
||||||||||||||| | ||||||| ||||||| |||| || |||||| ||||||
Sbjct 115 GATGTTGATTACTTTCACAATTCATATGCTCGGATAAAACCCTTTCAATTGAATGATGAG 174
Query 148 AATGCTTATACTTATGATATCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTT 207
||| |||||| |||| |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 175 TATGGTTATACACATGACATCGAACTTTATGGTAGATTGGGACTTCACTGTTACAATCTT 234
Query 208 CTTCACGAGGGAACCAACCTCAAACTCAT-GTGCATTCCCAAGTACAACACTAATAACAT 266
| || ||||||| ||||||||| | || | ||||| ||| ||||||||| | |
Sbjct 235 CA-CA--AGGGAACTAACCTCAAATTAATCGA-CATTCACAAATACAACACTGAG----T 286
Query 267 TGGGGTAAGTTCTGGGGACTACTACTACATAACGTTGGAGGCAATAGACACATACAACAA 326
|| | || |||| |||||| | |||||||||||||| |||||||||| | |||
Sbjct 287 TGTT-T---TT-TGGG---TACTAC-A--TAACGTTGGAGGCAGTAGACACATATACCAA 335
Query 327 CTCTCCATGCACTTTTCAAACGTACGTAAGTGAATGGTATCAAACTTCAGAACATGGATA 386
||||||||||||||||||||||| |||| | || |||| |||||| |||||||||||
Sbjct 336 CTCTCCATGCACTTTTCAAACGTGCGTACGGGAG-GGTA--AAACTTGGGAACATGGATA 392
Query 387 CCTTGTGGTAGAGACATATATTGCTAGATTAAAAGGTCCTACTGGCCCTCATAATACTTG 446
| || ||||| | ||| | ||| | ||||||||||| ||| | || | | | |||
Sbjct 393 CTTTATGGTACAAACAGAGATTTCCAGATTAAAAGGGCCT-C-GGAC-T-A-----CTTC 443
Query 447 TATTGGACGTGGGTGGATATGGGGATGGGAAGAGGAGGCCATCGATG-TTTACTACAAAG 505
|||||| | | | ||| ||||| | | | |||| || | |||| ||| |||||||
Sbjct 444 TATTGGGCCTCAGAGGAGATGGGAA-G--ATGAGGTGGT-A--GATGATTT-CTACAAAA 496
Query 506 GT-AAACTGCCTAAGTGGTTGACAAAAGATTTGTTGGCTGCAGCCAAGGAT--G----AA 558
|| ||| ||||||| ||||||||||| || | | |||||||| || ||| | ||
Sbjct 497 GTGAAA-TGCCTAACTGGTTGACAAAGGAGGAGCTAGCTGCAGCTAATGATAAGGGGCAA 555
Query 559 TACTATGTGGTGCAAGAATCAGACATT-CTAGAAAATGAGTGGCTTCATCTGTATGCTGA 617
||||||| | |||||||||| ||| || |||| |||||| ||||||||||| ||||||||
Sbjct 556 TACTATGAGTTGCAAGAATCTGAC-TTACTAGGAAATGAATGGCTTCATCTTTATGCTGA 614
Query 618 GATTGCATTGTACTCCAACTGGA 640
| ||||||||| || |||||||
Sbjct 615 GTTTGCATTGTCCTTGAACTGGA 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5