BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28930.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914717 jgi|Araly1|914717|Al_scaffold_0001_4971                    809    0.0  


> Ahg914717 jgi|Araly1|914717|Al_scaffold_0001_4971
Length=513

 Score =  809 bits (438),  Expect = 0.0
 Identities = 478/497 (96%), Gaps = 4/497 (1%)
 Strand=Plus/Plus

Query  1    ATGTTTATGGCCATAAAAATTTCCACCCTTTTCCTCCTCTTCCTTTTGGTTGAACCATGC  60
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGTCTATGGCCATAAAAATTTCCACCCTTTTCCTCCTCTTCCTTTTGGTTGAATCATGC  60

Query  61   ACCCCAAGATACATACCAGCAGATCTACATGAGGCCAACGAAGAAGGGAGACA-AGTACT  119
            ||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct  61   ACCGCAAGATACATACCAGCAGATCTACATGAGGTCAACGAAGAAGGGAGA-ATAGTACT  119

Query  120  AAAGGTACCAGATGAATCAAAGAGGCGCTACCTCCGTTTATTTAAATGGAAGGTGGAAGA  179
            ||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct  120  AAAGGCACCAGATGAATCAAAGAGGCGCTACTTCCGTTTATTTATATGGGAGGTGGAAGA  179

Query  180  TTTGCAACGTGAAGCAGATGAGAAATACCCACTCTGGAAATCTACCAATCACTTGGACCG  239
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  180  TTTGCATCGTGAAGCAGATGAGAAATACCCACTCTGGAAATCTACCAATCACTTGGCCCG  239

Query  240  ATCTTTGTTCCTACTAGAGAAAGCTCAGGATTATGTTCAGCTTTGGGACACGTGGAGGAA  299
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  240  ATCTTTGTTCCTACTAGAGAAAGCTCAGGATTATGTTCAGCTTTGGGACAAGTGGAGGAA  299

Query  300  GGG-CACATCTTTTGCCGGAAACCCATACGGTGACTTGCGGAACAATGTTCAAGGTGACT  358
            ||| || || ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  300  GGGCCA-ATTTTTTGCCGGAAACCCATACGGTGACTTGCGGAACAATGTTCAAGGGGACT  358

Query  359  TGTGGCCTAAACACTATGATTACTGTCGTCAATCTGAGGGCACAAATCTCTTGACTTACT  418
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TATGGCCTAAACACTATGATTACTGTCGTCAATCTGAGGGCACAAATCTCTTGACTTACT  418

Query  419  TGATGTATGATTTTTGTCGTCAATCTGAGGGTGCAAATCTCCTCAAGTACATGACCTATG  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  TGATGTATGATTTTTGTCGTCAATCTGAGGGTGCAAATCTCCTCAAGTACATGACCTATG  478

Query  479  GCCTCAGTCCAGAAGCT  495
            |||| ||||||||||||
Sbjct  479  GCCTTAGTCCAGAAGCT  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5