BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28940.1
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491863 jgi|Araly1|491863|fgenesh2_kg.7__1296__AT4G28940.1 1888 0.0
> Ahg491863 jgi|Araly1|491863|fgenesh2_kg.7__1296__AT4G28940.1
Length=1250
Score = 1888 bits (1022), Expect = 0.0
Identities = 1134/1188 (95%), Gaps = 7/1188 (1%)
Strand=Plus/Plus
Query 4 ATATGAGACTCACGATAAGCATA--GTACAAAGGGTAATAATTAAGAGAGAATTAAAGAG 61
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 2 ATATGAGACTCACGATAAGCATATTATACAAAGGG---TAATTAAGAGAGAGTTAAAGAG 58
Query 62 GGATAAGAAGTTATGGGACACTTCTTGATAGGTTTTCTTGTAGTTGTCTTGTCCGTGGGA 121
|| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 CGAGACGAAGTTATGGGATACTTCTTGATAGGTTTTCTTGTGGTTGTCTTGTCCGTGGGA 118
Query 122 AATGTTATTGAAGAAGCAAATGGTGAAATACCTAGAACCACATTGGAAAAAATAGAGAGG 181
||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 119 AATGTTATTGAAGAAGCAAATGGTGAAATACCTCGAACCATATTGGGCAAAATAGAGAGG 178
Query 182 ATGAATCAAAAGGGTCCTTATTT-GGGAATTGTAGCTCCAAACAACTATGAGCTTAACCC 240
|| |||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 179 ATTAATCAAAAAGGTCCTTATTTAGGG-ATTGTAGCTCCAAACAACTATGAACTTAACCC 237
Query 241 TCTTCTCGGTTCTAAAGCCTATTTCCCATCTTCTTCGTTGCCTTTCATCGATTTCGCAGG 300
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 238 TCTTCTCGGTTCTAAAGCCTATGTCCCATCTTCTTCGTTGCCCTTCATCGATTTCGCAGG 297
Query 301 TCGAAAATTTCGATTTGGAAAATTATCAAACCAACCAGTGATAATCGTGATGTCGGGATT 360
||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 298 TCGAAAATTCCGATTTGGAAAATTATCAAAACAACCAGTGGTAATAGTGATGTCGGGATT 357
Query 361 AGGAATGGTGAATGCAGGAGTAACAACACAATTACTGGTGAGCCTCTTTAGGCTGAAAGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGGAATGGTGAATGCAGGAGTAACAACACAATTACTGGTGAGCCTCTTTAGGCTGAAAGG 417
Query 421 AGTTTTGCATTATGGAATCGCTGGAAACGCAGATGTTAACCTTGAGATTGGCGACGTCAC 480
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 418 AGTTTTGCATTATGGAATCGCTGGAAACGCAGATATTAACCTTGAGATTGGTGACGTCAC 477
Query 481 TATTCCTCAATATTGGGCACACTCTGGCCTTTGGAATTGGCAGAGGTATGGAGATGGGAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TATTCCTCAATATTGGGCACACTCTGGCCTTTGGAATTGGCAGAGGTATGGAGATGGGAT 537
Query 541 TGACAACGAATTAGCTCTTGAATCCGGCGGAGACTATACTCGGGAAGTTGGTTATCTCCA 600
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 538 TGACAACGAATTAGCTCTCGAATCCGGTGGTGACTATACTCGGGAAGTTGGTTATCTCCA 597
Query 601 GTTTTCCAAATATAGTAACCGAACCGATAACTTGCTTAATCGAGTTTGGTATCAACCGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTTTCCAAATATAGTAACCGAACCGATAACTTGCTTAATCGAGTTTGGTATCAACCGGA 657
Query 661 AGAAATCTTCCCGGTCACCGGAACTCCTGAAGAGCGGCAACATGTGTTCTGGATTCCCGT 720
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAAATCTTTCCGGTCACCGGAACTCCTGAAGAGCGGCAACATGTGTTCTGGATTCCCGT 717
Query 721 TGACAAGTCCTACTTGAAACTTGCACGCAAACTCGAGGACACGAAGCTACCGCAGTGTGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 718 TGACAAGTCCTACTTGAAACTTGCACGCAAACTCGAGGACACGAAGCTACCGCAGTGCGT 777
Query 781 TAACACCACATGCCTTCCTCGACCACCGAAGGTCACCATCGTTAAACGTGGTATGAGTGC 840
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 778 GAACACCACATGCCTCCCTCGACCACCGAAGGTCACTATCGTTAAACGTGGAATGAGTGC 837
Query 841 AAGTGTTTTCATCGACAACGCAGCTTACCGGACTTTCCTCAACTCCAAGTTTAACGCCAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGTGTTTTCATCGACAACGCAGCTTACCGGACTTTCCTCAACTCCAAGTTTAACGCCAC 897
Query 901 CGCCGTTGAAATGGAGAGCGCCGCCGTGGCTCTCATTTCCCACCAGCAAAACCTCCCTTT 960
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 CGCCGTTGAAATGGAGAGCGCCGCCGTGGCTCTCATTTCCCACCAACAAAACCTCCCTTT 957
Query 961 CATCGTCATCCGTGCCCTCTCCGATCTCGCTGGCGGCGGCTCCGACGTCTCCAACGAGGC 1020
||| ||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||
Sbjct 958 CATTGTCATCCGTGCACTCTCCGATCTAGCTGGAGGCGGTTCCGACGTGTCCAACGAGGC 1017
Query 1021 CAGCATATTCAGCAGCCTCGCCGCAGAAAACTCCGTCGATATTCTCGTTAAGTTCGTTGC 1080
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 CAGCATATTCAGCAGCCTCGCCGCGGAAAACTCCGTCGATATTCTCGTTAAGTTCGTTGC 1077
Query 1081 TTTGTTGCCTCCACACGAAAGCAAGATTCAATCAGAATGATAAATGTGGATTAAGACTAA 1140
|||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 TTTGTTGCCTCCGCACGGAAGCAAGATTCAATCAGAATGATAAATTTGGATTAAGACTTT 1137
Query 1141 AGAGTGTGGATTAAGAGCATGTAACGGGAAAAGTAAGATGTATTATGT 1188
||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1138 CGAGCGTGGAATAAGAGCATGTAACGGGAAAAGTAAGATGTATTATGT 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48416104590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5