BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28950.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945129 jgi|Araly1|945129|scaffold_701358.1 1046 0.0
> Ahg945129 jgi|Araly1|945129|scaffold_701358.1
Length=671
Score = 1046 bits (566), Expect = 0.0
Identities = 637/672 (95%), Gaps = 2/672 (0%)
Strand=Plus/Plus
Query 275 TTTTGTTCTTGGACTAAGAGAATGAGTGCTTCGAAGTTCATAAAATGTGTTACTGTTGGA 334
||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 TTTGGTTCTTGGACTAAGATAATGAGCGCTTCCAAGTTCATAAAATGTGTTACTGTTGGA 60
Query 335 GATGGGGCTGTTGGGAAGACATGTATGCTTATCTGTTACACTAGCAACAAGTTTCCTACT 394
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGGAGCTGTCGGGAAGACATGTATGCTTATCTGTTACACTAGCAACAAGTTTCCTACT 120
Query 395 GATTATATACCGACTGTGTTCGACAATTTCAGTGCCAATGTAGCTGTGGATGGACAAATC 454
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTATATCCCGACTGTGTTCGACAATTTCAGTGCCAATGTAGCTGTGGATGGACAAATC 180
Query 455 GTTAATTTAGGGCTATGGGACACTGCCGGTCAAGAAGATTACAGTAGGTTAAGACCATTG 514
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GTGAATTTAGGGCTATGGGACACTGCAGGTCAAGAAGATTACAGTAGGTTGAGACCATTG 240
Query 515 AGTTATAGAGGAGCTGATATCTTCGTCTTAGCCTTTTCGCTTATTAGCAAGGCGAGTTAC 574
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTTACAGAGGAGCTGATATCTTTGTCTTAGCCTTTTCGCTTATTAGCAAGGCGAGTTAC 300
Query 575 GAAAATGTACTCAAGAAGTGGATGCCTGAACTTCGTCGGTTTGCGCCAAATGTTCCCATA 634
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GAGAATGTACTAAAGAAGTGGATGCCTGAACTTCGTCGGTTTGCCCCAAATGTTCCCATA 360
Query 635 GTTCTTGTTGGTACAAAGCTAGATCTCCGGGATGACAAGGGATACCTCGCGGATCACACC 694
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 361 GTTCTTGTTGGTACAAAGCTAGATCTCCGAGATGATAAGGGATACCTCGCGGATCACACC 420
Query 695 AATGTCATTACCTCTACTCAGGGAGAGGAATTGAGGAAGCAAATTGGTGCAGCTGCTTAT 754
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 AATGTCATTACATCTACTCAGGGAGAGGAACTGAGGAAGCAAATTGGTGCAGCTGCTTAT 480
Query 755 ATTGAGTGTAGTTCCAAGACTCAACAAAATGTGAAAGCAGTGTTT-GATACAGCGATCAA 813
|| |||| |||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 481 ATCGAGTCCAGTTCCAAGACTCAACAAAATGTGAAAGCAGT-TTTCGACACAGCGATCAA 539
Query 814 GGTGGTTCTTCAGCCTCCAAGGAGGAAAGAGGTCCCGAGGAGGAGGAAGAATCATAGAAG 873
||||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||||||
Sbjct 540 GGTGGTTCTTCAGCCTCCAAGGAGGAAGGAGGTCACAAGGAGGAAGAAGAAACATAGAAG 599
Query 874 ATCCGGTTGCTCCATTGCGAGTATTGTCTGTGGAGGTTGCACCGCTGCTTAAGACACAAC 933
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 600 ATCCGGTTGCTCCATTGCGAGTATTGTCTGTGGAGGCTGCACCGCGGCTTAAGGCACAAC 659
Query 934 AAAAGTTTCAAC 945
| |||| |||||
Sbjct 660 ACAAGTCTCAAC 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5