BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28980.2
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491860 jgi|Araly1|491860|fgenesh2_kg.7__1293__AT4G28980.1 2287 0.0
> Ahg491860 jgi|Araly1|491860|fgenesh2_kg.7__1293__AT4G28980.1
Length=1700
Score = 2287 bits (1238), Expect = 0.0
Identities = 1398/1474 (95%), Gaps = 16/1474 (1%)
Strand=Plus/Plus
Query 22 TTTTAAAGGAGATGGATAAACAACCGGCGACCAGTTGGAGTATCCATACCCGGCCGGAGA 81
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 TTTT-AAGGAGATGGATAAACAACCGGCGAGCAGCTGGAGTATCCATACCCGGCCGGAGA 59
Query 82 TAATCGCCAAGTACGAGATCTTCGAGCGAGTCGGATCCGGAGCTTACGCCGACGTTTACA 141
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 60 TAATCGCCAAGTACGAGATCTTCGAGCGAGTCGGATCCGGTGCTTACGCCGATGTTTACA 119
Query 142 GAGCTCGCCGTCTCTCCGACGGTCTAATCGTCGCGCTCAAGGAGATTTTCGATTACCAAT 201
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 120 GAGCTCGCCGTCTCTCCGACGGACTCATCGTCGCGCTCAAGGAGATTTTCGATTACCAGT 179
Query 202 CTGCGTTCCGGGAGATTGACGCGCTCACCATCCTCAATGGATC-TCCTAATGTAGTTGTT 260
||||||| || || ||||||||||||||||||||||||||| | ||||||||| || |||
Sbjct 180 CTGCGTTTCGAGAAATTGACGCGCTCACCATCCTCAATGGA-CATCCTAATGTCGTCGTT 238
Query 261 ATGCACGAATACTTCTGGCGTGAGGAAGAGAACGCTGTGCTTGTGCTTGAGTTTCTTAGG 320
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 ATGCACGAATACTTCTGGCGTGAGGACGAGAACGCTGTGCTTGTGCTTGAGTTTCTTAGG 298
Query 321 TCGGATCTCGCTGCGGTGATCCGAGATGGTAAGAGGAAGAAGAAGGTAGAAGGAGGGGAT 380
|| |||||||||||||||||||| |||| ||| |||||||||||| |||||||||| |||
Sbjct 299 TCAGATCTCGCTGCGGTGATCCGTGATGCTAATAGGAAGAAGAAGATAGAAGGAGGAGAT 358
Query 381 GGATTCTCGGTTGGGGAGATTAAGAGATGGATGATTCAGATTTTAACCGGTGTTGATGCT 440
|||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 359 GGATTCTCTGTTGGGGAGATTAAGAGATGGATGATTCATATTTTAACTGGAGTTGATGCT 418
Query 441 TGTCATCGGAATTTGATTGTACATAGAGATTTGAAGCCTGGGAATATGTTGATTTCTGAT 500
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGCCATAGGAATTTGATTGTACATAGAGATTTGAAGCCTGGGAATATGTTGATTTCTGAT 478
Query 501 GATGGAGTTCTTAAGCTTGCTGATTTTGGTCAGGCTAGGATACTCATGGAGCATGATATT 560
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 GATGGAGTGCTTAAGCTTGCTGATTTTGGTCAGGCTAGGATACTCATGGAGCCTGATATT 538
Query 561 GTAGCTTCAGATGAAAACCAACAAGCTTACAAACTGGAAGACAAA-GATGGAGAAACCAG 619
||||||||||||||||||||||| | ||| ||||||||||| ||| ||||||||||||||
Sbjct 539 GTAGCTTCAGATGAAAACCAACAGGTTTATAAACTGGAAGA-AAATGATGGAGAAACCAG 597
Query 620 --C-GAACCACCAGAAGTTATTCCTGATTATGAGAACTCACCTAGGCAAGGGTCTGATGG 676
| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 CACAGAACCACCGGAAGTTATTCCTGATTATGAGAACTCACCTCGGCAAGGGTCTGATGG 657
Query 677 TCAGGAACGGGAAGCGATGAGTAAAGACGAGTACTTCCGACAGGTGGAAGAGCTCAAGGC 736
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 TCAGGAACGGGTAGCGATGAGTAAAGACGAATACTTCCGACAGGTGGAAGAGCTCAAGGC 717
Query 737 TAAACAGGTTGTTAGAGATGATACTGATAAGGACTCGAATGTGCATGATGGAGACATATC 796
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 718 TAAACAGGTTGTTAGAGATGATACTGATAAGGACTCGAACGTGCATGATGGAGATATATC 777
Query 797 TTGCCTTGCAACGTGCACTGTTAGTGAAATGGATGATGATCTCGGTAGGAACTCGTTTTC 856
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 778 TTGTCTTGCAACGTGCACTGTTAGTGAAATGGATGATGATCTTGGTAGGAACTCTTTTTC 837
Query 857 TTACGATGCTGACGAAGCAGTGGATGATACACAGGGTTTGATGACATCTTGTGTGGGAAC 916
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 838 TTACGATGCTGATGAAGCAGTGGATGATACACAAGGTTTGATGACATCTTGTGTGGGTAC 897
Query 917 CCGATGGTTTAGGCCACCAGAACTGCTCTATGGATCTACGATGTATGGGTTAGAGGTCGA 976
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 898 CAGATGGTTTAGGCCACCAGAACTGCTCTATGGATCTACAATGTATGGGTTAGAGGTTGA 957
Query 977 TCTATGGTCGCTTGGTTGTGTGTTTGCAGAACTCTTGTCTCTTGAGCCTTTGTTCCCAGG 1036
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCTGTGGTCGCTTGGTTGTGTGTTTGCAGAACTCTTGTCTCTTGAGCCTTTGTTCCCAGG 1017
Query 1037 AATTTCAGATATTGATCAGATCAGCAGAGTGACCAATGTGCTGGGAAATTTAAATGAAGA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AATTTCAGATATTGATCAGATCAGCAGAGTGACCAATGTGCTGGGAAATTTAAATGAAGA 1077
Query 1097 GGTCTGGCCTGGTTGTGTTGATCTTCCAGACTACAAGTCAATCTCATTTGCTAAAGTAGA 1156
|||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1078 GGTCTGGCCTTGTTGTGTCGATCTTCCAGACTACAAATCTATCTCATTTGCTAAAGTAGA 1137
Query 1157 ATCTCCTCTTGGTATTGAAGGATGCCTTCCCAACCATTCAGGGGATGTGATATCGCTGCT 1216
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1138 ATCTCCTCTTGGTATAGAAGGTTGTCTTCCCAACCATTCAGGGGATGTGATATCGCTGCT 1197
Query 1217 CAAGAAGCTTATCTGTTATGATCCAGCTAGTAGAGCTACTACTATGGAGATGCTGAATGA 1276
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1198 CAAGAAGCTTATCTGTTATGATCCAGCTAGTAGAGCTACTGCTATGGAGATGCTGAATGA 1257
Query 1277 CAAATATTTAAGT-GAAGAGCCTCTTCCAGTTCCAGTTTCAGAGCTCTATGTGCCTCCGA 1335
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAAATATTTCA-TCGAAGAGCCTCTTCCAGTTCCAGTTTCAGAGCTCTATGTGCCTCCGA 1316
Query 1336 CAATGAGT-GGACCAGATGAGGATTCTCCGA-GAAAGTGGAATGATTACAGAGA-AATGG 1392
||| |||| || ||||||||||||||||| | ||| |||||||||||||||| | |||||
Sbjct 1317 CAAGGAGTTGG-CCAGATGAGGATTCTCC-ACGAATGTGGAATGATTACAGA-ACAATGG 1373
Query 1393 ATTCAGATTCAGATTTTGATGGCTTTGGACCCATGAATGTAAAGCCTACCAGTAGTGGAT 1452
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATTCAGATTCAGATTTTGACGGCTTTGGACCCATGAATGTAAAGCCTACCAGTAGTGGAT 1433
Query 1453 TTACAATAGAATTCCCCTGACCTTGGCATTTAAG 1486
|||||||||||||||||||||| ||| |||||||
Sbjct 1434 TTACAATAGAATTCCCCTGACCCTGGTATTTAAG 1467
Score = 195 bits (105), Expect = 2e-48
Identities = 140/155 (90%), Gaps = 9/155 (6%)
Strand=Plus/Plus
Query 1920 TGAAAATGGTAACATTTACAATTGGAAAGTCGGTGTTAGCCTTTAGCTATTAGCTGAAGA 1979
|||||||||||||||||||||| || |||| |||||||||||||||||| ||||| ||||
Sbjct 1541 TGAAAATGGTAACATTTACAATCGG-AAGTTGGTGTTAGCCTTTAGCTA-TAGCTAAAGA 1598
Query 1980 GCTAGTTTTCTTGTTGCCCAGGCCATTCTTTACCCTATTTTTCATCTGAAGTAACAATGA 2039
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1599 GCTAGTTTT-TTGTTGCCCAGGCCAATCTTTACCCTATTTTTCATCTGAAGTAACAATGA 1657
Query 2040 AACA-AA-A----TCTATATATACTCGAGTTTTGC 2068
|| | || | ||||||| ||||||||||||||
Sbjct 1658 AAAAGAATAAAAATCTATATTTACTCGAGTTTTGC 1692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77856460780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5