BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28990.2
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945127 jgi|Araly1|945127|scaffold_701356.1 1277 0.0
> Ahg945127 jgi|Araly1|945127|scaffold_701356.1
Length=1110
Score = 1277 bits (691), Expect = 0.0
Identities = 829/892 (93%), Gaps = 23/892 (3%)
Strand=Plus/Plus
Query 391 CATAGAACTCGGGCAAGTTCTAGCTCACCAGGCCGTCGTGGATATGAAGATCACAAG-CA 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 222 CATAGAACTCGGGCAAGTTCTAGCTCACCAGGCCGTCGTGGATATGAAGATCAC-CGTCA 280
Query 450 TGGCTCTGATCTTAATCATTCAGGCGTTCCACCTCGTGGCCGTGAGTTAAGCAGCAGAAG 509
||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||
Sbjct 281 TGGCTCTGATCTTAATCATTCAGGCATTAAACCTCGAGGCCGTGAGTTCAGCAGCAGAAG 340
Query 510 GGAAGCACCTGGGAGACACAGAGACTATTCCCCACCCTTA-GCTAGAGGTGGAGCTGGTG 568
||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 341 GGAAGCATCTGGGAGACACAGAGACTATTCACCACCC-TATGCTAGAGGTGGAGCTGGTG 399
Query 569 CTCGTCCTTATCGAAGAGGTTTAGATGGGCCTGAACCTCCACATGGAAGGGATGGCATGA 628
||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 400 CTCGTCCTTATGGAAGAGGTTTAGATGGGCCTGAACCTGCACATGGAAGCGATGGCATGA 459
Query 629 GCAGAAATAATATATCAAAGGTGCAACCAAGAGAAGGAGATTGGTACTGTCTTGATCCAT 688
||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 460 GCAGAAATAATATCCCAAAGGTGCAACCAAGAGATGGAGATTGGTACTGTCTAGATCCAT 519
Query 689 TATGCAGAAACTTGAACTTTGCGAGACGCGAGTCCTGCTACAAATGCAAGAGGCATCGTT 748
|||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 520 TATGCAGAAACTTGAACTTTGCGAGACGTGAGTCCTGCAACAAATGTAAGAGGCATCGTT 579
Query 749 ATGCACCGGCTAATAGTCCTCCACTGCCTCGCCTTCTTCCTCCTCCCATGAATCAT-TCC 807
|||||||||||| |||||||||||||||||| |||| ||||||||||||||||| | |||
Sbjct 580 ATGCACCGGCTAGTAGTCCTCCACTGCCTCGTCTTCCTCCTCCTCCCATGAATC-TCTCC 638
Query 808 CCAAGAAGAGACTTTAATGGCTACAGATCTCCTCCGCGTGGCTGGCCCAGAGACTACCCG 867
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 639 CCAAGAAGAGACTTTAATGGCTACAGATCTCCTCCACGTGGCTGGCCCAGAGACTACCCG 698
Query 868 CCGCCAAGGCATGACCATCCCACATGGAGAGACAGAGAACGAGACCGTCCGCATTACTCA 927
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 CCCCCAAGGCATGACCATCCCACATGGAGAGACAGAGAACGAGACCGTCCGCATTACTCA 758
Query 928 GACCATGAGTACCCTCCTAGCAGAAGGATAGCATCTGACTGGGCCCATACAGAGCCGCTC 987
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 759 GACCATGAGTACCCTCCTAGCAGAAGAATAGCGTCTGACTGGGCCCATACAGAGCCACTC 818
Query 988 CCAAAACCTCATTATGACAGACGACCACCTCTCAGTCCACC---TC---------GTGGT 1035
|||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 819 CCAAAACCTCATTACAACAGACGACCACCTCTCAGTCCACCGCATCCTCCACCTCGTGGT 878
Query 1036 GGCAGATGGGGACGAGTTTTGAGAGAGAGGAGCAGATCCCCGCCATTGAGAGATGTTCCA 1095
||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 879 GGCAGATGGGGACGACTTTCAAGAGAGAGGAGCAGATCACCGCCATTGAGAGATGTTCCA 938
Query 1096 CCACCGCCATTGAGAGATGGTCCACCACCGTCATTGAGAGGAGGCGG---TCCACCGCTG 1152
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 939 CCACCGCCATTGAGAGATGGTCCACCACCGTCATTGAGAGGAGGCGGCGGTCCAACGCTG 998
Query 1153 CACAGAGATTACCGCCGTGACAGTCACTTTGACAGA-GAAAGACGAGACGATGGGCGTGG 1211
|||||||||||||||||||||||| ||||||||| | | ||||||||| ||| | |||||
Sbjct 999 CACAGAGATTACCGCCGTGACAGTAACTTTGACA-ATGGAAGACGAGATGATCGTCGTGG 1057
Query 1212 CGGCAGAGGCAGAATGGGAAACTCTTACTGATGCAAAAACTGTGTATGTCTT 1263
|||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1058 CGGCAGAGGCAGAATGGGAAACTCTTACTGATGCAAAAACCGTGCATGTCTT 1109
Score = 255 bits (138), Expect = 5e-67
Identities = 193/217 (89%), Gaps = 13/217 (6%)
Strand=Plus/Plus
Query 41 ACAATCGGAGAG----AAATGGGGTCGACAGAAAAAGAGCAGACGACGCAACATCACCCG 96
|||||||||||| ||||||||||||| |||||| | ||||||||||| |||||||||
Sbjct 3 ACAATCGGAGAGAAATAAATGGGGTCGACTGAAAAAAATCAGACGACGCAGCATCACCCG 62
Query 97 CCTCACATCAGCAGTCTCGTCGTACGTCCCTCCGGAAGCAACGACAGAGAAGACGGCCGC 156
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 63 CCTCACATCAGCAGTCTCGTCGTACGACCCTCCGGAAGCAACGACGGAGAAGACGGCCGC 122
Query 157 AACG-C-C-GCCG--G----AGACTATGAGCCCGGAGAAGTCTCTCGTGACCGGCCTTCG 207
|||| | | |||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 123 AACGTCGCCGCCGCCGCCGGAGACTATGAGCCCGGAGAAGTTTCTCGTGACCGGCCTTCA 182
Query 208 TTTAATCGCTCGGATCGGTATAAGGGTGACAATGGTG 244
| || |||| |||||||||||||||||||||||||||
Sbjct 183 TATACTCGCACGGATCGGTATAAGGGTGACAATGGTG 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5