BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29000.1
Length=2720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491858 jgi|Araly1|491858|fgenesh2_kg.7__1291__AT4G29000.1 3376 0.0
> Ahg491858 jgi|Araly1|491858|fgenesh2_kg.7__1291__AT4G29000.1
Length=2630
Score = 3376 bits (1828), Expect = 0.0
Identities = 2140/2288 (94%), Gaps = 32/2288 (1%)
Strand=Plus/Plus
Query 442 GAGATGGGTGAAGACGGCGGAGGAGGCGAATTCCCGCCAAAAAAGGACGGTGTTGAAGAG 501
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 364 GAGATGGGTGAAGACGGCGGAGGAGGCGAATTCCCGCCAAAAAAGGATGGTGTTGAAGAG 423
Query 502 GGTTTTCCGACGAAGAAGCCAGCAAGGCAGCTCGACTTCACTGGTGGCTCCGATGAACAT 561
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 424 GGTTTTCCGACGAAGAAGCCAGCAAGACAGCTTGACTTCACTGGTGGCTCTGATGAACAA 483
Query 562 TCACTGTCTAAACCAGCGGCTCCTACCGTCGTAGCTACGTCGGTGAAACCCATCATTAGT 621
|||||||||||| ||| |||||||||||||||||||||| ||||||||||| || ||| |
Sbjct 484 TCACTGTCTAAAGCAGTGGCTCCTACCGTCGTAGCTACGGCGGTGAAACCCGTCGTTACT 543
Query 622 AGCTCTGTCCCTTCGACGATACGGCCGGGTATGACCATAGCAATCGGTCAGGTTACTCAG 681
||||| ||||||||||||||||||||||| ||||||| |||| || || ||||
Sbjct 544 AGCTCCATCCCTTCGACGATACGGCCGGGTGTGACCATTGCAA----TC-GG----TCAG 594
Query 682 GTACGACCGACGTTACCAATGGCGACGACGATGTCAAATCCGCCGTCACAGTCACAAATC 741
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 595 GTACGACCGACGTTACCAATGGCGACGAC---GTCAAATCCGCCGTCACAATCACAAATC 651
Query 742 GTTAACGCGCCAATTAGGCATCCGATACCGGAATCTCCAAAAGCTAGAGGTCCAAGGCCT 801
||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 652 CTTAACGCGCCAATCAGGCATCCAAAACCGGAATCTCCAAAAGCTAGAGGTCCAAGGCCT 711
Query 802 AATGTGGAAGGTAGAGATGGAACCCCTCAAAAGAAGAAGCAGTGTAACTGTAAACACTCA 861
| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 712 ATTGTGGAAGGTAGAGATGGAACTCCTCAGAAGAAGAAGCAGTGTAACTGTAAACACTCA 771
Query 862 CGCTGCTTGAAATTGTACTGTGAATGCTTTGCATCCGGAACATATTGTGACGGTTGTAAC 921
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CGCTGCTTGAAACTGTACTGTGAATGCTTTGCATCCGGAACATATTGTGACGGTTGTAAC 831
Query 922 TGTGTAAATTGTTTCAACAATGTTGATAATGAACCTGCTAGACGAGAAGCTGTGGAAGCA 981
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 832 TGTGTAAATTGTTTCAACAATGTTGATAATGAACCTGCAAGACGAGAAGCTGTGGAAGCA 891
Query 982 ACTCTGGAGCGGAATCCATTTGCGTTCAGGCCTAAAATTGCTAGCAGTCCACATGGTGGG 1041
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 892 ACTCTGGAGCGGAATCCATTTGCGTTCAGGCCTAAAATTGCTAGCAGTCCACATGGTGTG 951
Query 1042 CGGGATAAAAGGGAGGATATCGGTGAAGTTGTGTTGTTAGGGAAACATAACAAAGGATGC 1101
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 952 CGGGATAAAAGGGAGGACATTGGTGAAGTTGTGTTGTTAGGGAAACATAACAAAGGATGC 1011
Query 1102 CACTGCAAAAAATCAGGATGCCTTAAGAAGTATTGCGAGTGCTTTCAAGCAAATATTCTT 1161
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1012 CACTGCAAGAAATCGGGATGCCTTAAGAAGTATTGTGAGTGCTTTCAAGCAAACATTCTT 1071
Query 1162 TGTTCCGAGAACTGCAAATGCTTGGATTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAA 1221
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1072 TGTTCTGAGAACTGCAAATGCTTGGATTGCAAAAACTTTGAAGGAAGTGAAGAGAGACAA 1131
Query 1222 GCTTTGTTTCACGGTGAACATTCCAACCACATGGCTTATCTTCAACAAGCAGCAAATGCA 1281
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GCTCTGTTTCACGGTGAACATGCCAACCACATGGCTTATCTTCAACAAGCAGCAAATGCA 1191
Query 1282 GCCATTACTGGAGCTGTTGGTTCCTCCGGCTTTGCTCCTTCTCCAGCACCTAAGAGAAGG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GCCATTACTGGAGCTGTTGGTTCCTCCGGCTTTGCTCCTTCTCCAGCACCTAAGAGAAGG 1251
Query 1342 AAAGGTCAAGAGATTTTGTTCAACCAAGCAATTAAAGATTCATCTAGGCTTAGCCACTTT 1401
||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |||
Sbjct 1252 AAAGGTCAAGAGATTTTGTTCAACCAAGCAACCAAAGATTCATCTAGACTTGGCCAGTTT 1311
Query 1402 CCACAGGTAAATAATGGAAGAACTGGTGGACCAACCTCAGGCACATCTCCATCACCTGTT 1461
|||| |||||||| ||||||| || ||||||||||||||||| ||||||| |||||||||
Sbjct 1312 CCACGGGTAAATAGTGGAAGAGCTAGTGGACCAACCTCAGGCTCATCTCCGTCACCTGTT 1371
Query 1462 TCTCGTGCTGGTGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAGGTCCCTTTTA 1521
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1372 TCTCGTGCTGGTGGCAATGCATCGTCAGCTCCATCAAAGTTTGTATATAGGTCCCTTTTA 1431
Query 1522 GCAGATATAATCCAACCACATGATGTGAGAGCACTTTGCTCTGTTTTAGTCACTGTAGCC 1581
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1432 GCAGATATAATCCAACCGCATGATGTTAGAGCACTTTGCTCTGTTTTAGTCGCTGTAGCC 1491
Query 1582 GGAGAAGCAGCAAAGACATCAACAGATAAAAGAAATGAAATAGAAAATCGGGTGGACGAT 1641
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1492 GGAGAAGCAGCAAAGACATCAACAGATAAAAGAAATGAAATAGAAAATCGTGTGGAAGAT 1551
Query 1642 CAAACAGAAACTTCTTTAGCTTCTTCTGCACAAGATCAGCCTCAAGGCAATAACAATGCA 1701
||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 1552 CAAACAGAAACTTCTTTAGCTTCTTCTGCACAAGATCAGCCCCAAGGCGATAATGATGCA 1611
Query 1702 GCTGATGTGGAGATGGTTGCAACTGATCATAATCAAGCTGATAAGTCTGGACCAGAGGAA 1761
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1612 GCTGATATGGAGATGGTTGCAACTGATGGGAATCAAGCTGATAAGTCTGGACCAGAGGAA 1671
Query 1762 TCCAATTCAGATGGTGTTGATGCCTCTAAAGTGACCCCGCTATCTCCAGCAACTTTGGCT 1821
|||||||||||||||| |||||||| |||| || || |||||||||||||||||||||
Sbjct 1672 TCCAATTCAGATGGTGCCGATGCCTCGAAAGGGAATCCACTATCTCCAGCAACTTTGGCT 1731
Query 1822 TTGATGTGCGATGAACAAGACACTATCTTCATGGTGGCTGCACCTTCACCTAATGGCT-C 1880
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | |
Sbjct 1732 TTGATGTGCGATGAACAAGACACTATCTTCATGGTGGCAGCACCTTCGCCTAATGG-TGC 1790
Query 1881 AGTCGATCCCAATGGCTGCAGACCAAACTCACAGGGCCAGTCAGAAATTTACGCAGAGCA 1940
|||||| ||| |||| ||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 1791 AGTCGACCCCGGTGGCCGCAGAACGAACTCACAGGGCCAGTCAGAGATTTACGCAGAGCA 1850
Query 1941 GGAGAGACTGGTGTTAACCAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGA 2000
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1851 GGAGAGACTGGTATTAACCAAATTCAGAGACTGCCTTAGTCGACTTATCTCTTACGCAGA 1910
Query 2001 AATAAAAGAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAATCGC 2060
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1911 AATAAAAGAATCAAAGTGTTTATCTTTAGCAAGAATGCACATACAGCCACCTGCAACCGC 1970
Query 2061 GACTGTAAAAACCGAGAATGGGATTCAACAGCAAGTACCAATTGTGAATGGAGCTTCGCG 2120
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1971 GACTGTGAAAACCGAGAATGGGGTTCAACAGCAAGTACCAATTGTGAATGGAGCTTCGCG 2030
Query 2121 AACCAATTGTCAACCTACACTCAACAAACCGCAGCCTATGCAGCTGATGAACACAACATC 2180
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2031 AACCAATTCTCAACCTACACTCAACAAACCGCAGCCTATGCAGCTGATAAACACAACATC 2090
Query 2181 AGCAGCACCAGCA--A-CAGC---AACAAACACTCAACATCTTCAAAAACCTCCAGCTTT 2234
|||| || ||||| | |||| |||||||||||| |||||||| ||||||||||||||
Sbjct 2091 AGCATCAGCAGCAGCAGCAGCTGCAACAAACACTCATCATCTTCATAAACCTCCAGCTTT 2150
Query 2235 ATCAGAGAAGAAAGACCCCTGAATCAGATAGATTATTATACTCTACTTAGGACAGAAAAT 2294
|||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||
Sbjct 2151 ATCAGAGAAGAAAGACCCCTGAATCAGATAGATTAT-A--CTCTACTTAGGACAGATAAT 2207
Query 2295 AACTTACCAGAGAGAGCACGCTGAAATCTGCCTCACCACCGCCCTATATTATCAGGTAAT 2354
||||||||||||||| || ||||||||||||||||| || ||||||| ||||||||| ||
Sbjct 2208 AACTTACCAGAGAGAACAAGCTGAAATCTGCCTCACGACTGCCCTAT-TTATCAGGTCAT 2266
Query 2355 CCCACCGTAATTTTTCTTTCTCAGTGGCGGTTGTTGCGGCTTCAACGCATTGGCAGGTGA 2414
||||| |||||||||||||||| |||||||||||||||||||| ||||||| || ||||
Sbjct 2267 GCCACCATAATTTTTCTTTCTCACTGGCGGTTGTTGCGGCTTCAGCGCATTGCCAAGTGA 2326
Query 2415 TTAGAGAGAGTAATAGACACAAGCTTTTATTGTGTCGTTAAGctttcttctcacttttct 2474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 TGAGAGAGAGTAATAGACACAAGCTTTTATTGTGTCGTTAAGCTTTCTTCTCACTTTTCT 2386
Query 2475 ctttcttttcttATAAAGTCTCCTCTTTAAAGCCCCTTGTGGCTGGTGTAGATTTTGGTG 2534
||||||||||||| |||||| |||||||||||||||| ||||||| |||||||||||| |
Sbjct 2387 CTTTCTTTTCTTAAAAAGTCCCCTCTTTAAAGCCCCT-GTGGCTGTTGTAGATTTTGGAG 2445
Query 2535 AGCTTTGTTTCTT-TACTACACGAAttttttgttagttttttttttGTGTTCAGTATCAC 2593
||||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 2446 AGCTTTGTTTCTTCTACTACACGAGCTTTTTGTTAGTTTTTTG---GTGTTCAGTATTAC 2502
Query 2594 TTTTTATGTTGATGGTTTAGCTGTGGAACACCCTTGTTTACTGTGTCGGATTATGAT--- 2650
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 2503 TTTTTCTGTTGATGGTTTAGCTGTGGAACATCCTTGTTTACTGTGTCTGATTATGATGAT 2562
Query 2651 CTGAGATGTTTCTCAATCAGCTTCTGTAGGATTTGAAAGTAATATATAATAAATCCTTAA 2710
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 2563 CTGAGATGTTTCTCAATCAGCTTCTGTAGGATTTGAAAGTAATATATAATACATCCCTAA 2622
Query 2711 TTTGATTA 2718
|||| |||
Sbjct 2623 TTTGGTTA 2630
Score = 331 bits (179), Expect = 1e-89
Identities = 310/366 (85%), Gaps = 38/366 (10%)
Strand=Plus/Plus
Query 1 ATGTTagagagagggaggaggagagatggtgtgagagaagaagaagaaCAAAACCGAAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAGAGAGAGGGAGGAGGAGAGATGGTGTGAGAGAAGAAGAAGAACAAAACCGAAAG 60
Query 61 TAtttttttgtgcttttaatttttgtttttaattttACCAAATTCCTCTGAGGGcttctt 120
|| ||||| ||||||||| ||| || | |||| |||| | | | | |
Sbjct 61 TA--TTTTT-TGCTTTTAA--TTT-TTCGT--TTTT----AATT--T-T-A---C--CAA 99
Query 121 cttcttcttctccgtcttcttcttcttcttcttcttcGTTTAGAGCTAAAACCCAATAGA 180
||| | ||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 100 ATTC--C-TCT--GAGGGCTTCTTCTTCTTCTTCTTC---AAGAGCTAAAACCCAATAGA 151
Query 181 ACCCTAATTCTC-A-TCTCCCTTAAAGCTTATCCCTTT-TCTCTCTCTATATATAT-ACG 236
|||||||||||| | ||| | ||||||||||||||||| ||||||||| | || || |||
Sbjct 152 ACCCTAATTCTCAATTCT-CTTTAAAGCTTATCCCTTTCTCTCTCTCTCTCTA-ATCACG 209
Query 237 CGGATCAAATTCAAAGTCTCAGTTTTTGAGCTTT-CTTAACAGCCGCCGAATCGATTTGT 295
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 210 CGGATCAAATTCAAAGTCTCAGTTTTTGAGCTTTTCTTAACAGCCGCCGAATCGGTTTGT 269
Query 296 GATTTTCCCGCTCCGGAGAGATTCGGATCTGGATTTT-TCGAGCTGATTTGTAGGAATTT 354
||||||| |||||||| |||||||||||||||||||| | ||||||||||| |||||||
Sbjct 270 GATTTTCTCGCTCCGGCGAGATTCGGATCTGGATTTTCTT-AGCTGATTTGTGGGAATTT 328
Query 355 CTCGTT 360
||||||
Sbjct 329 CTCGTT 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102615120030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5