BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29010.1
Length=2565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491857 jgi|Araly1|491857|fgenesh2_kg.7__1290__AT4G29010.1 3803 0.0
> Ahg491857 jgi|Araly1|491857|fgenesh2_kg.7__1290__AT4G29010.1
Length=2509
Score = 3803 bits (2059), Expect = 0.0
Identities = 2396/2549 (94%), Gaps = 62/2549 (2%)
Strand=Plus/Plus
Query 11 TGTAAACTCCTGATTTATCAAAGGCCCCATTTTTATC-ACAAAACCAGATCTTTATCCAA 69
|||||||||||||||||||||||| |||| || || | | ||||||||||||||||||||
Sbjct 1 TGTAAACTCCTGATTTATCAAAGGGCCCAATTATAACAAAAAAACCAGATCTTTATCCAA 60
Query 70 TTTTGTCACTCACCGAATAATAAAGCTTTCATTTTTCAATCTCAT--CAGAGAGAAA-TT 126
||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||| |
Sbjct 61 TTTTGTCACTCACCGAACGCTAAAGTTTTCATTTTTCAATCTCATCACAGAGAAAAACTA 120
Query 127 A-AGCTATGGCGAAGAAGATTGGAGTAACGATGGAAGTTGGGAACGATGGTGTTGCTGTC 185
| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 ATAGCTATGGCGAAGAAGATTGGAGTGACGATGGATGTTGGGAACGATGGTGTTGCTGTC 180
Query 186 ATCACCATTTCTAACCCTCCTGTTAACTCTTTAGCCAGTCCAATTATTTCTGGGTTGAAG 245
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 ATCACCATTTCTAATCCTCCTGTTAACTCTTTGGCCAGTCCAATTATTTCTGGGTTGAAG 240
Query 246 GAGAAGTTTCGTGACGCCAATCAAAGGAATGATGTTAAGGCCATCGTGTTGATC-GGGAA 304
||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 241 GAGAAGTTTCGAGACGCCAATCAAAGGAATGATGTTAAGGCCATCGTATTGA-CTGGGAA 299
Query 305 CAATGGAAGATTTTCGGGTGGTTTTGATATCAATGTCTTTCAGCAAGTTCATAAGACTGG 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CAATGGAAGATTTTCGGGTGGTTTTGATATCAATGTCTTCCAGCAAGTTCATAAGACTGG 359
Query 365 GGATTTATCGCTTATGCCTGAAGTATCTGTTGAGCTTGTGTGTAACCTGATGGAAGACTC 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GGATTTATCGCTTATGCCTGAAGTATCTGTTGAGCTCGTGTGTAACCTGATGGAAGACTC 419
Query 425 CAGGAAGCCGGTTGTTGCTGCAGTTGAAGGATTAGCTCTTGGTGGTGGTTTGGAACTTGC 484
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 420 TAGGAAGCCGCTTGTTGCTGCAGTTGAAGGATTAGCTCTTGGTGGTGGTTTAGAACTGGC 479
Query 485 AATGGCGTGTCATGCCAGAGTTGCTGCTCCGAAAGCTCAATTAGGCTTACCAGAACTGAC 544
||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 480 TATGGCGTGTCATGCCCGTGTTGCTGCTCCGAAAGCTCAACTAGGCTTACCAGAATTGAC 539
Query 545 TCTTGGAGTGATTCCTGGTTTTGGAGGAACCCAACGTCTTCCAAGGTTAGTAGGCCTTGC 604
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TCTTGGAGTGATTCCAGGTTTTGGAGGAACCCAACGTCTTCCAAGGCTAGTAGGCCTTGC 599
Query 605 AAAAGCAACGGATATGATACTGCTTTCTAAGTCAATATCCTCAGAAGAGGGGCACAAACT 664
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 600 AAAAGCAACGGATATGATACTGCTTTCGAAGTCAATATCGTCAGAAGAGGGGCAGAAACT 659
Query 665 GGGTCTCATTGATGCCTTGGTGCCACCTGGAGATGTGTTGAGCACATCCAGAAAGTGGGC 724
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 GGGTCTTATTGATGCCTTGGTGCCACCTGGAGATGTGTTGAGCACGTCCAGAAAGTGGGC 719
Query 725 TCTAGACATTGCAGAGGGACGTAAACCCTTTCTGCAG-TCACTGCACAGAACCGACAAAA 783
|||||| |||||||| ||||||||||||||| ||| | ||||||||||| ||||||||||
Sbjct 720 TCTAGATATTGCAGATGGACGTAAACCCTTTTTGC-GCTCACTGCACAGGACCGACAAAA 778
Query 784 TTGGTTCTTTATCTGAAGCTCGTGCTATATTGAAGAATTCAAGACAGCTAGCCAAGAAGA 843
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 TTGGTTCTTTATCTGAAGCTCGTGCTATATTAAAGAATTCAAGACAGCTAGCCAAGAAGA 838
Query 844 TTGCCCCAAATATGCCTCAGCACCATGCTTGCATTGAGGTGATTGAAGAAGGAATCATCC 903
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 TAGCCCCAAATATGCCTCAGCACCATGCTTGCATTGAGGTGATTGAAGAAGGAATCGTCC 898
Query 904 ATGGAGGATACAGTGGGGTTCTCAAGGAAGCAGAAGTTTTCAAGCAACTAGTACTGTCAG 963
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGGAGGATATAGTGGGGTTCTTAAGGAAGCAGAAGTTTTCAAGCAACTAGTACTGTCAG 958
Query 964 ACACTGCAAAGGGTCTTGTTCATGTTTTCTTTGCACAACGTGCAACATCAAAAGTGCCTA 1023
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 ACACTGCAAAGGGTCTTGTTCATGTTTTCTTCGCACAACGTGCAACATCAAAAGTGCCTA 1018
Query 1024 ATGTAACTGACGTTGGATTGAAACCAAGGCCGATaaaaaaaGTTGCAGTTATTGGTGGCG 1083
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1019 ATGTAACTGACGTTGGATTGAAACCGAGGCCGATAAAAAAAGTTGCAGTTATTGGTGGAG 1078
Query 1084 GTCTGATGGGTTCAGGCATCGCTACGGCTCTACTTCTAAGCAATATAAGAGTTGTGCTCA 1143
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 GTCTGATGGGTTCTGGCATCGCTACGGCTCTACTTCTAAGCAATATAAGAGTTGTGCTTA 1138
Query 1144 AAGAAATAAACTCAGAATTCCTTATGAAGGGAATAAAATCAGTTGAAGCAAATATGAAAA 1203
|||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct 1139 AAGAAATAAATTCAGAATACCTTATGAAGGGAACAAAATCAGTTGAAGCAAATATCAAAG 1198
Query 1204 GCTTGGTATCTAGGGGGAAACTGACACAAGATAAAGCAGGAAAGGCCCTCTCTTTGTTCA 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCTTGGTATCTAGGGGGAAACTGACACAAGATAAAGCAGGAAAGGCCCTCTCTTTGTTCA 1258
Query 1264 AGGGAGTACTTGATTACACAGAATTCAATGATGTGGACATGGTCATAGAGGCAGTGATTG 1323
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1259 AGGGAGTACTCGACTACACAGAATTCAAAGATGTGGACATGGTCATAGAGGCAGTGATTG 1318
Query 1324 AAAACATTCAATTGAAACAAAACATATTCAAAGAAATCGAAAAGGTTTGTTCACCCCACT 1383
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 AAAACATTCAGTTGAAACAAAACATATTCAAAGAAATCGAAAAGGTTTGTTCACCCCATT 1378
Query 1384 GCATTTTGGCGAGTAATACATCTACTATCGACCTCGATGTAATTGGTGAAAAGACTAACT 1443
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1379 GCATTTTGGCGAGTAATACATCTACTATCGACCTCGACGTAATTGGGGAAAAGACTAACT 1438
Query 1444 CAAAAGATCGCATTGTTGGCGCACATTTCTTCAGTCCGGCCCATCTGATGCCCCTTCTCG 1503
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1439 CAAAAGATCGCATTGTTGGCGCACATTTCTTCAGCCCGGCCCATCTGATGACCCTTCTCG 1498
Query 1504 AGATTGTTCGTTCAAAGAATACTTCTGCTCAGGTGATTCTGGATCTCATGGCGGTTGGAA 1563
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1499 AGATTGTTCGTTCAAAGAATACTTCTGCTCAGGTGATTTTGGATCTCATGGCGGTTGGAA 1558
Query 1564 AGGCCATAAAGAAAGTTCCCGTGGTGGTTGGAAACTGCATAGGCTTTGCAGTGAATAGGA 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGGCCATAAAGAAAGTTCCCGTGGTGGTTGGAAACTGCATAGGCTTTGCAGTGAATAGGA 1618
Query 1624 CATTCTTTCCTTATTCACAAGCTGCACATATGTTGGCCAATCTAGGTGTTGACTTGTTCA 1683
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 CATTCTTTCCGTATACACAAGCTGCACATATGTTGGCCAATCTAGGTGTTGACTTGTTCA 1678
Query 1684 GAATTGACAGCGTTATTACCTCTTTCGGCTTGCCATTGGGCCCTTTCCAGCTTGGTGATT 1743
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1679 GAATTGACAGCGTGATTACCTCTTTCGGCTTGCCGTTGGGCCCTTTCCAGCTTGGTGATT 1738
Query 1744 TGGCTGGACACGGGATTGGATTAGCAGTTGGGCCGATATATGCCAAGGTCTATGGTGACC 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TGGCTGGACACGGGATTGGATTAGCAGTTGGGCCGATATATGCCAAGGTCTATGGTGACC 1798
Query 1804 GCATGTTCAGATCTCCAATGACAGAGCTTCTTCTTAAGAGCGGGCGAAATGGAAAAATCA 1863
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1799 GCATGTTCAGATCTCCAATGACCGAGCTTCTTCTTAAGAGCGGGCGAAATGGAAAAATCA 1858
Query 1864 ACGG-AAGAGGATACTATATATACGAAAAGGGAAGCAAACCAAAACCTGATCCATCAGTG 1922
|||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1859 ACGGGAA-AGGATACTATATATACGAAAAGGGAAGCAAACCAAAACCCGATCCATCAGTG 1917
Query 1923 CTTTCAATTGTTGAGAAATCAAGGAAACTGACCAATATCATGCCTGGTGGGAAGCCTATA 1982
||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1918 CTTTCAATTGTTGAGGAATCGAGGAAACTGACCAATATAATGCCTGGTGGGAAGCCTATA 1977
Query 1983 TCAGTAACTGATAAAGAAATTGTAGAGATGATCTTATTCCCTGTTGTCAACGAGGCATGC 2042
|||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1978 TCAGTATCTGACAAAGAAATTGTAGAGATGATCTTATTCCCTGTGGTTAACGAGGCATGC 2037
Query 2043 CGCGTCCTAGATGAAGGAGTTGTGATCCGAGCCTCAGACTTGGACATTGCGTCTGTCCTT 2102
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 CGTGTCCTAGATGAAGGAGTTGTGATCCGAGCCTCAGACTTGGACATTGCGTCTGTCCTT 2097
Query 2103 GGAATGAGTTTTCCTTCTTACCG-GGGAGGAATTGTTTTCTGGGCAGACACTGTTGGACC 2161
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 2098 GGAATGAGTTTTCCTTCTTACCGTGGG-GGAATTGTTTTCTGGGCAGACACAGTTGGACC 2156
Query 2162 AAAGTACATATATGAGAGGCTCAAGAAATTGTCGGAGACTTATGGCAGCTTTTTCAAACC 2221
||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2157 AAAGTACATATATGAAAGGCTCAAGAGATTGTCGGAGACTTACGGCAGCTTTTTCAAACC 2216
Query 2222 ATCGAGGTATCTGGAGGAAAGAGCAATGAATGGAATGCTTTTGAGTGAATCGAAATCGTC 2281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 GTCGAGGTATCTGGAGGAAAGAGCAATGAATGGAATGCTTTTGAGTGAATCGAAATCGTC 2276
Query 2282 GAGGTC-CAAATTGTGAAGCGTTTAATTAAGTATATGCAGAAGGAGAGGCTGAAGGTGTT 2340
|||||| | | |||||||||||||| | | ||| || |||||||||||
Sbjct 2277 GAGGTCTCGA-TTGTGAAGCGTTTA-----G-----G-AGA-GG-----CTGAAGGTGTT 2318
Query 2341 AGTCACTAAATGAAAATAAATCAGTCTCTCTTGTTGTTTCAAAGTTCAAAGTTAAAATGC 2400
||||| || ||| |||||||||||||||||| ||||||||||||| || || ||
Sbjct 2319 AGTCA--AA-TGAGAATAAATCAGTCTCTCTTATTGTTTCAAAGTT-AA--TT-----GC 2367
Query 2401 TATTAAGGTGTGGTTGTTGTTAACACTCTTAAAATAAACAA-TTTTCTGCTCTTAATAAA 2459
||||||||||| |||||||||||||| | |||| |||||| |||| |||||||||||||
Sbjct 2368 TATTAAGGTGT--TTGTTGTTAACACT-T-AAAAGAAACAAATTTTATGCTCTTAATAAA 2423
Query 2460 TGTTTGTAGTGACGTCA--GT--TTC--ATA-A-A-GTTATGATTTGTTCTAGCCAGAGA 2510
|||||||||||| | || || ||| ||| | | ||||||||||||||||| ||| ||
Sbjct 2424 TGTTTGTAGTGATGCCATTGTCATTCTCATATATAAGTTATGATTTGTTCTAGTCAG-GA 2482
Query 2511 -GAAAA-ATATGAAGAAATTTACATCttt 2537
||||| ||| || |||||||||||||||
Sbjct 2483 AGAAAATATA-GA-GAAATTTACATCTTT 2509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96711132055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5