BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29020.1

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945124 jgi|Araly1|945124|scaffold_701353.1                        372    3e-102


> Ahg945124 jgi|Araly1|945124|scaffold_701353.1
Length=367

 Score =  372 bits (201),  Expect = 3e-102
 Identities = 211/216 (98%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  370  ggtctaggcggtggtgtaggtggtcttggcggtctaggtggtctaggtggtggttcaggt  429
            ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  152  GGTCTTGGCGGTGGTGTAGGTGGTCTTGGCGGTGTAGGTGGTCTAGGTGGTGGTTCAGGT  211

Query  430  cttggtcatggagtaggtggaattggtggtgACCCTGGTATTGGTAGTGGTATCGGTGGA  489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  CTTGGTCATGGAGTAGGTGGAATTGGTGGTGACCCTGGTATTGGTAGTGGTATCGGTGGA  271

Query  490  CTCGGCGGTGCAGGTGGTCTAGGCGGTATAGGCGGTGTTGGTGGTTTGGGTGGAATTGGC  549
            || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  272  CTAGGCGGTGCAGGTGGTCTAGGCGGTATAGGCGGTGTTGGTGGTTTGGGTGGAGTTGGC  331

Query  550  GGTGGAAGCGATTGCGGTGGCGTAATTCCTCACCAT  585
            ||||||||||||||||||||||||||||| ||||||
Sbjct  332  GGTGGAAGCGATTGCGGTGGCGTAATTCCACACCAT  367


 Score =  185 bits (100),  Expect = 4e-46
 Identities = 129/142 (91%), Gaps = 5/142 (4%)
 Strand=Plus/Plus

Query  103  AAG-GAAGAGATGGCAGTTAGGTGTTTAGCCGTGTTCCTCGTTG-CTCTCATGGTGTCTC  160
            ||| |||||||||||| ||||||||||| ||||||||||||||| || |||||||| |||
Sbjct  11   AAGAGAAGAGATGGCAATTAGGTGTTTATCCGTGTTCCTCGTTGCCT-TCATGGTGGCTC  69

Query  161  AAGCAGTCACCGCAACAAGACCGGCTCCAACCAAGAATGTCGGAGCTGGTCTTGACGACC  220
            |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||
Sbjct  70   AAGCAGTCACCGCAACAAGACCGATTCCAGCCAAGAATGTCGGAGCTGGTCTTGACGACC  129

Query  221  AAAAGAAC-TTTGTAGCGTTCg  241
            |||||| | ||||  |||||||
Sbjct  130  AAAAGA-CGTTTGGGGCGTTCG  150



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29583383592


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5