BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29030.1

Length=725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945123 jgi|Araly1|945123|scaffold_701352.1                        717    0.0  


> Ahg945123 jgi|Araly1|945123|scaffold_701352.1
Length=442

 Score =  717 bits (388),  Expect = 0.0
 Identities = 426/444 (96%), Gaps = 4/444 (1%)
 Strand=Plus/Plus

Query  7    AGGCAACAAACATAATCAACTTAAATCTTATCTACTTTCTATTTCTTTTT-AATCAAAAT  65
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    AGGCAACAAACATAATCAACTTAAATCTTATCTACTTTCTATTTCTTTTTAAATCAAAAT  60

Query  66   TACCGTTCTTAACTATGGCGAAGTGGTTTTTCACTATCTTCTTGGTTTTTGCCCTAGCCT  125
            |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct  61   TACCGTTCTTGACTATGGCGAAGTGGTTTTTCACTATCTTCTTGGCTTTTGCCCTAGCAT  120

Query  126  CAGCTTTAGCTTGTGGCGCAAGAAACGTCCCAGTAGGCCTCTCTGACCAAAAGAACTACC  185
            |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  121  CAGCTTTAGCTTGTGGTGCAAGAAACGTCCCAGTAGGCCTCTCTGACCAGAAGAACTACC  180

Query  186  TCGGATATGGTGGCGGATATTCCGGCGTTGGAGACAATGGTTTACCCTTTGGTGGCGTCG  245
            |||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct  181  TCGGATATGGTGGCGGATATTCCGGCGTTGGAGACAATGGTTTACCATTCGGTGGTGTCG  240

Query  246  GTGGAGGTGTGTCTGGTCCCGGAGGTAATCTTGGTTATGGGGGATTTGGTGGTGCT-GGT  304
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct  241  GTGGAGGTGTATCTGGTCCCGGAGGTAATCTTGGTTATGGGGGATTTGGCGGT-CTTGGT  299

Query  305  GGCGGCTTAGGCGGTGGTTTGGGCGGTGGAGCAGGCAGTGGATTAGGCGGTGGCTTAGGT  364
            || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  300  GGGGGCTTAGGAGGTGGTTTGGGCGGTGGAGTAGGCAGTGGATTAGGCGGTGGCTTAGGT  359

Query  365  GGTGGAAGTGGAATTGGTGCCGGAACCAGTGGAGGAAGTACCGGAGGAGTTCATTTCCCT  424
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  360  GGTGGAAGTGGAATTGGTGCCGGAACCGGTGGAGGAAGTACCGGAGGAGTTCATTTCCCT  419

Query  425  TGAGTTGTTACTTTGGTTTTTAAG  448
            |||||||||||||||||||| |||
Sbjct  420  TGAGTTGTTACTTTGGTTTT-AAG  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26686041900


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5