BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29033.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889231 jgi|Araly1|889231|Al_scaffold_0007_1217 383 3e-106
> Ahg889231 jgi|Araly1|889231|Al_scaffold_0007_1217
Length=246
Score = 383 bits (207), Expect = 3e-106
Identities = 233/246 (95%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCATCAAGCAAATGTCTTTTCTTTGTGTTCTTGTGTTTGGCTGCTCTCTTGACT 60
||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 1 ATGACTTCATCAAGCAAATGTATTTTCTTTGCGTTTTTGTGTTTGGCTGCTCTCTTGACT 60
Query 61 CCATATCTTGCGGAAGCTGAAGATAGGAGTAAACTAATTCCGATAGGTCCTTGTTCGAAG 120
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 61 CCATATCTTGCGGAAGCTGAAGATAGGAGCAAACTGATTCCCATAGGTCCTTGTTCGAAG 120
Query 121 ATTGCGAACTGCAACCAAACATGCATTGAATCACAATTTCTAGGGGGGAAATGCATCAAA 180
||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 ATTCCGAACTGCAACCAAACATGCATTGAATCACAATTTCTAGGCGGAAAATGCATCAAA 180
Query 181 TGGTATCCAGACTCCATAAAAGAAACATGTGCTTGTTTGGTAAAACCTTCTATAACACAT 240
|||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 TGGTATCCGGATTCCACAAAAGAAACATGTGCTTGTTTGGTAAAACCTTCTATAACACCT 240
Query 241 GTTTAA 246
||||||
Sbjct 241 GTTTAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5