BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29040.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491854 jgi|Araly1|491854|fgenesh2_kg.7__1287__AT4G29040.1 2606 0.0
Ahg480455 jgi|Araly1|480455|fgenesh2_kg.3__3156__AT2G20140.1 1748 0.0
> Ahg491854 jgi|Araly1|491854|fgenesh2_kg.7__1287__AT4G29040.1
Length=1599
Score = 2606 bits (1411), Expect = 0.0
Identities = 1540/1602 (96%), Gaps = 9/1602 (1%)
Strand=Plus/Plus
Query 8 tacaagagagaaagaaaggaacct--cgaactc-agagaaattgagagaag-agagaaga 63
||||||||||||| |||| ||||| |||||| |||||||| ||||| || ||||||
Sbjct 1 TACAAGAGAGAAACAAAGTAACCTGAAGAACTCAAGAGAAATCGAGAG-AGAAGAGAATC 59
Query 64 aTCATGGGACAAGGACCATCGGGAGGATTGAATCGGCAAGGAGATCGGAAACCTGATGGT 123
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 60 ATCATGGGTCAAGGACCATCCGGAGGATTGAATCGGCAAGGAGATCGGAAGCCTGATGGT 119
Query 124 GGAGATAAGAAAGAGAAGAAGTTTGAGCCGGCGGCACCACCGGCTCGTGTAGGGAGGAAG 183
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 GGCGATAAGAAGGAGAAGAAGTTCGAGCCGGCGGCACCACCGGCTCGTGTAGGGAGGAAG 179
Query 184 CAAAGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTTCCGACGGTGACTCCGTCTACT 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAACGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTTCCGACGGTGACTCCGTCTACT 239
Query 244 AAGTGTAAGCTCCGGTTACTGAAATTGGAACGGATCAAGGATTATTTGTTGATGGAGGAA 303
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 AAGTGTAAGCTCCGGTTACTGAAATTGGAGCGGATCAAGGATTATTTGTTGATGGAGGAA 299
Query 304 GAGTTTGTGGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGAAAGCTGAGGAAGATAGA 363
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GAGTTTGTTGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGAAAGCTGAAGAAGATAGA 359
Query 364 TCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGAATTTGGAAGAGTTGATT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGAATTTGGAAGAGTTGATT 419
Query 424 GATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGACCTGAGTACTACGTTGGGATTTTG 483
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 420 GATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGGCCTGAGTACTATGTTGGGATTTTG 479
Query 484 TCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGATTTTGATGCATAATAAGGTT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGATTTTGATGCATAATAAGGTT 539
Query 544 CTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTT 599
Query 604 GAGAAAGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTTAGAAGCTCAGATTCAGGAG 663
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGAAGGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTTAGAAGCTCAGATTCAGGAG 659
Query 664 ATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTGAGTTGTATGAAGATATTGGTATT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTGAGTTGTATGAAGATATTGGTATT 719
Query 724 AAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCT 783
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGCCACCTAAGGGTGTGATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCT 779
Query 784 AAGGCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATT 843
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAGGCGGTGGCGAATTCTACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATT 839
Query 844 CAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGAC 903
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 840 CAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGGGAGCTTTTCAGAGTTGCCGATGAC 899
Query 904 CTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGGTATGAC 963
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 CTTTCACCATCAATTGTCTTCATAGATGAGATTGATGCTATTGGTACCAAGCGGTATGAC 959
Query 964 GCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTT 1019
Query 1024 GATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTGCAACAAACAGAATCGAGAGT 1083
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 GATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTGCAACAAACAGAATCGAGACT 1079
Query 1084 CTTGACCCAGCACTGCTTCGACCTGGACGGATTGATAGGAAAATCGAGTTCCCTCTCCCA 1143
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTTGACCCGGCACTGCTTCGACCTGGACGGATTGATAGGAAAATCGAGTTCCCTCTCCCA 1139
Query 1144 GATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCGAAGATGACTCTCTCGGAA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCGAAGATGACTCTCTCGGAA 1199
Query 1204 GATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACGAGTTCTCAGGAGCTGATATAAAG 1263
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1200 GATGTAAACCTGGAAGAGTTTGTGATGACAAAAGACGAGTTCTCAGGAGCAGATATCAAG 1259
Query 1264 GCTATATGCACTGAGGCTGGTCTACTAGCTCTCAGGGAGCGTCGTATGAAGGTGACACAT 1323
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1260 GCTATATGCACCGAGGCTGGTCTACTTGCTCTGAGGGAGCGTCGTATGAAGGTGACGCAT 1319
Query 1324 CCTGATTTCAAGAAAGCAAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGCGTCCCTGAA 1383
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1320 CCTGATTTCAAGAAAGCGAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGTGTCCCTGAA 1379
Query 1384 GGCCTCTACATGTAAAATTATAATCATATCGTCATCATCGGCTTTCCTCCTCCACACTTT 1443
||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1380 GGCCTTTACATGTAAAATCATAATCATATCGTCATCATCGGCTTTCCTCCTCTACACTTT 1439
Query 1444 GTTATAATACTTTTGCTTCTGCTTAGGATCTTTCTGGTCATATAAATTGATCATGTTTTC 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GTTATAATACTTTTGCTTCTGCTTAGGATCTTTCTGGTCATATAAATTGATCATGTTTTC 1499
Query 1504 TGATCTCCTCCGGTAAAACAATTCCTCATTTCCATTTAGGATGTCTATTTC-GCATTAAA 1562
||||||||| | ||||||| |||||||||||||||||||||| ||||||| | ||||
Sbjct 1500 TGATCTCCTTCAGTAAAACGATTCCTCATTTCCATTTAGGATACCTATTTCTG-ATTAGC 1558
Query 1563 CTTAACCAACTGAAACCAAGCCCAAATaaaaaaaC-TGATCT 1603
|||||||||||||||||||| ||||| |||| ||| ||||||
Sbjct 1559 CTTAACCAACTGAAACCAAGACCAAA-AAAACAACCTGATCT 1599
> Ahg480455 jgi|Araly1|480455|fgenesh2_kg.3__3156__AT2G20140.1
Length=1573
Score = 1748 bits (946), Expect = 0.0
Identities = 1225/1361 (90%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 48 gagaga-agaga-gaag-aaTCATGGGACAAGGACCATCGGGAGGATTGAATCGGCAAGG 104
|||||| ||||| |||| || ||||| ||||||||||| || |||||||||||||||||
Sbjct 24 GAGAGAGAGAGACGAAGCAAAAATGGGTCAAGGACCATCCGGCGGATTGAATCGGCAAGG 83
Query 105 AGATCGGAAACCTGATGGTGGAGATAAGAAAGAGAAGAAGTTTGAGCCGGCGGCACCACC 164
|||||||||||| |||||||| || ||||||||||||||||| || || || ||||||||
Sbjct 84 AGATCGGAAACCAGATGGTGGTGACAAGAAAGAGAAGAAGTTCGAACCAGCCGCACCACC 143
Query 165 GGCTCGTGTAGGGAGGAAGCAAAGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTT-C 223
||||||||||||||||||||| ||||||| ||||| || || |||||||||||| || |
Sbjct 144 TGCTCGTGTAGGGAGGAAGCAACGGAAGCAAAAAGGACCTGAAGCGGCGGCGAGA-TTGC 202
Query 224 CGACGGTGACTCCGTCTACTAAGTGTAAGCTCCGGTTACTGAAATTGGAACGGATCAAGG 283
||||||||||||| |||||||| |||||||| || || || ||| |||| || |||||||
Sbjct 203 CGACGGTGACTCCTTCTACTAAATGTAAGCTTCGATTGCTTAAACTGGAGCGAATCAAGG 262
Query 284 ATTATTTG-TTGATGGAGGAAGAGTTTGTGGCGAATCAAGAGAGGTTGAAACCTCAGGAA 342
| |||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 263 ACTATTTGCTT-ATGGAGGAAGAGTTTGTGGCGAATCAGGAGAGATTGAAACCTCAGGAA 321
Query 343 GAGAAAGCTGAGGAAGATAGATCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTT 402
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 322 GAGAAAGCTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTT 381
Query 403 GGGAAT-TTGGAAGAG-TTGATTGATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGAC 460
|| ||| || |||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 382 GGCAATCTT-GAAGAGCTT-ATTGATGAGAATCACGCCATTGTTTCTTCTTCTGTTGGTC 439
Query 461 CTGAGTACTACGTTGGGATTTTGTCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTT 520
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 440 CTGAGTATTACGTTGGGATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGTTGCT 499
Query 521 CGATTTTGATGCATAATAAGGTTCTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATC 580
| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 500 CCATTTTGATGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATC 559
Query 581 CAATGGTGTCTGTGATGAAAGTTGAGAAAGCTCCTTTGGAGTCATATGCTGATATTGGAG 640
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 560 CAATGGTGTCTGTGATGAAAGTGGAGAAAGCTCCTTTGGAATCATATGCTGACATTGGAG 619
Query 641 GTTTAGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTG 700
||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| |
Sbjct 620 GTTTAGAAGCTCAGATTCAGGAGATCAAGGAAGCTGTTGAGCTACCTTTAACACATCCCG 679
Query 701 AGTTGTATGAAGATATTGGTATTAAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTG 760
|||||||||||||||| |||||||| |||||||| ||||| || |||||||||||||| |
Sbjct 680 AGTTGTATGAAGATATCGGTATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAG 739
Query 761 GAACTGGGAAGACATTGCTTGCTAAGGCGGTTGCGAATTCAACATCAGCTACTTTCTTGA 820
| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 740 GCACTGGGAAGACATTGCTTGCTAAGGCAGTGGCGAATTCTACATCAGCTACTTTCTTGC 799
Query 821 GAGTTGTTGGTAGTGAGCTGATTCAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGAG 880
| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 800 GTGTTGTCGGTAGTGAACTGATTCAGAAGTATTTGGGAGATGGTCCCAAGCTTGTGAGGG 859
Query 881 AACTTTTCAGAGTTGCTGATGACCTTTCACCATCAATCGTCTTCATAGATGAGATTGATG 940
| |||||||| ||||| ||||||||||||||||| || || |||||||| ||||||||||
Sbjct 860 AGCTTTTCAGGGTTGCCGATGACCTTTCACCATCTATTGTTTTCATAGACGAGATTGATG 919
Query 941 CTGTTGGTACCAAGCGGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTA 1000
||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
Sbjct 920 CTGTTGGCACCAAGCGGTATGACGCAAACTCAGGTGGTGAACGTGAAATCCAAAGAACCA 979
Query 1001 TGTTGGAACTTCTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCC 1060
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 980 TGTTGGAACTACTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTAATTC 1039
Query 1061 TTGCAACAAACAGAATCGAGAGTCTTGACCCAGCACTGCTTCGACCTGGACGGATTGATA 1120
| || |||||||||||||| ||||||||||| ||||| ||| |||| || ||||| || |
Sbjct 1040 TCGCGACAAACAGAATCGAAAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACA 1099
Query 1121 GGAAAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACA 1180
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1100 GGAAAATCGAGTTCCCTCTTCCAGATATCAAAACAAGGAGACGTATCTTCCAGATACACA 1159
Query 1181 CATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACG 1240
|||| ||||||||| | | |||||||| ||| | ||||||||||| |||||||||||||
Sbjct 1160 CATCAAAGATGACTTTGGCCGAAGATGTGAACTTAGAAGAGTTTGTAATGACGAAAGACG 1219
Query 1241 AGTTCTCAGGAGCTGATATAAAGGCTATATGCACTGAGGCTGGTCTACTAGCTCTCAGGG 1300
||||||||||||||||||||||||| ||||| || || |||||||| || ||||| || |
Sbjct 1220 AGTTCTCAGGAGCTGATATAAAGGCGATATGTACAGAAGCTGGTCTGCTTGCTCTTAGAG 1279
Query 1301 AGCGTCGTATGAAGGTGACACATCCTG-ATTTCAAGAAAGCAAAGGAGAAGGTTATGTTC 1359
||||||| ||||| ||||| ||| || | |||||||| || ||||||||||||||||||
Sbjct 1280 AGCGTCGAATGAAAGTGACGCATG-TGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTC 1338
Query 1360 AAGAAGAAAGAAGGCGTCCCTGAAGGCCTCTACATGTAAAA 1400
|||||||||||||| ||||||||||| || ||||||| |||
Sbjct 1339 AAGAAGAAAGAAGGAGTCCCTGAAGGTCTTTACATGTGAAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5