BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29050.1
Length=2062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353897 jgi|Araly1|353897|fgenesh1_pg.C_scaffold_7001070 1724 0.0
Ahg316005 jgi|Araly1|316005|fgenesh1_pm.C_scaffold_2001038 765 0.0
Ahg938998 jgi|Araly1|938998|scaffold_503189.1 311 1e-83
> Ahg353897 jgi|Araly1|353897|fgenesh1_pg.C_scaffold_7001070
Length=1974
Score = 1724 bits (933), Expect = 0.0
Identities = 1353/1546 (88%), Gaps = 67/1546 (4%)
Strand=Plus/Plus
Query 1 ATGAAATTT-TTTGTACTAGTGCTTCTTCTGGTGCTGCAATTCTTCTCCAACAAAGCACT 59
||| ||||| |||||||||||||||||||| || ||||||||| ||||||||||||| |
Sbjct 1 ATG-AATTTGTTTGTACTAGTGCTTCTTCTTTTGTTGCAATTCTCCTCCAACAAAGCAGT 59
Query 60 TTCTCAGAGT---GAAGAAGGAGAGTTTGGTTTTAATGGTTACTTGTACGACAACTCTGG 116
|||| ||||| ||||||||||||||||| || ||||||||||| ||| ||| || |||
Sbjct 60 TTCTGAGAGTGAAGAAGAAGGAGAGTTTGGCTTCAATGGTTACTTATACAACAGCTATGG 119
Query 117 AATTG-CAATTAC-TAACTCCAAAGGCTTGA-TGAAGCTCACAAA-TTCGTCTGAATTC- 171
|| || ||| | | | ||||||| ||||| | ||||||| |||| | | | | | |
Sbjct 120 AACTGCCAA-T-CTTGACTCCAATGGCTT-ATTGAAGCTTTCAAACTAC-AC-G-GTACA 173
Query 172 TCATA-TGGTCACGTTTTCTACAACTCT-CCAGTTA-GATTCAAGAACTCACCAAACGGT 228
| | |||||| ||||||||||||| | |||| || | ||||||||||||||||||| |
Sbjct 174 AAAAACTGGTCAAGTTTTCTACAACT-TACCAG-TACGGTTCAAGAACTCACCAAACGCT 231
Query 229 ACCGTTTCGTCTTTCTCCACTACCTTTGTTTTCGCTATAGTCTCT-A-ATGT-TAATGCA 285
||||||||||| ||||||||||| ||||||||||||||||| ||| | || | || |
Sbjct 232 ACCGTTTCGTCCTTCTCCACTACATTTGTTTTCGCTATAGTTTCTCAGAT-TCCAA--CT 288
Query 286 CTTGA-TGGCCATGGACTTGCATTTGTC-ATCTCTCCCACCAAAGGCTTGCCCTATAG-T 342
||| | |||||||||| |||| |||| | |||| |||||||||||||||||||||| | |
Sbjct 289 CTT-AGTGGCCATGGAATTGCTTTTG-CTATCTGTCCCACCAAAGGCTTGCCCTAT-GCT 345
Query 343 TCATCCTCACAATATCTAGGGCTCTTTAATTTGACAAACAATGGAGATCCCTCTAATCAT 402
|| ||||||||||||| |||||||||||| | ||||||||||| || ||| ||||||
Sbjct 346 ACACCCTCACAATATCTTGGGCTCTTTAATATCTCAAACAATGGAAATTTCTCAAATCAT 405
Query 403 ATTGTAGCAGTTGAGTTTGATACATTTCAAAATCA-AGAATTT-GATGACATGGATAATA 460
||||||||||||||||||||||| || || || |||||| || ||||| ||| | |
Sbjct 406 GTTGTAGCAGTTGAGTTTGATACA-ATCCTAAGCACTGAATTTAGA-GACATAGATGACA 463
Query 461 ACCATGTTGGTATTGACATCAATAGCTTGAGCTCAGAGAAAGCTTCTACAGCAGGTTATT 520
||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 464 ACCATGTTGGTATCGACATCAACAGCTTGAGATCAGAGAAAGCTTATACAGCAGGTTATT 523
Query 521 ACGAAGACGATGATGGTACTTTCAAAAACATCCG-C-CTCATAAATCAAAAACCTATACA 578
|||||||| |||||||||||||||||||| | | |||||||| | |||||| |||||
Sbjct 524 ACGAAGAC---GATGGTACTTTCAAAAACAT--GTCTCTCATAAACCGAAAACCGATACA 578
Query 579 AGCCTGGATTGAATATGATTCCTCAAGGAGACAACTTAACGTCACAATCCATCCTATTCA 638
||||||||||||||||||||||||||| | ||| ||||| |||||||| |||||||||||
Sbjct 579 AGCCTGGATTGAATATGATTCCTCAAGAAAACAGCTTAATGTCACAATTCATCCTATTCA 638
Query 639 T-CTCCCTAAGCCAAAGATTCCATTGCTTTCTCTAACCAAAGATTTATCTCCATATCT-T 696
| | || |||||||||| |||| ||||||||||||||||||||||||| |||||||| |
Sbjct 639 TGTTTCC-AAGCCAAAGACTCCACTGCTTTCTCTAACCAAAGATTTATCACCATATCTCT 697
Query 697 TTCGACTC-TATGTATGTTGGCTTCACTTCAGCCACAGGC-CGTCTTCGTTCATCTCACT 754
|| || | |||||| ||||| ||||| ||| |||||||| | | ||| |||||| ||||
Sbjct 698 TT-GA-GCGTATGTACGTTGGGTTCACGTCATCCACAGGCTC-TGTTCTTTCATCCCACT 754
Query 755 ATATTCTTGGTTGGACCTTCAAGCTCAATGGGACAGCTTCAAATATAGATATTTCTCGTC 814
|||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 755 ATATTCTTGGTTGGACGTTTAAGCTCAATGGGACAGCTTCAAATCTAGATATTTCTCGTC 814
Query 815 TTCCAAAACTTCCTAGA-GACTCT----CGGA--GTAC-A--AGTGTGAAAAAGATCTTG 864
|||||||||||||| || |||| | || | | | ||| ||| ||||||||||
Sbjct 815 TTCCAAAACTTCCT-GATGACTATAAAAAAGACTCTCCGAGTAGTCTGAGAAAGATCTTG 873
Query 865 GCTATTAGTTTGAGTTTAACCAGCCTCGCCATCCTCGTCTTCTTGACCATAAGCTAT-AT 923
||||| |||||||||||||| ||||| | ||||||||||||||| ||||||| | ||
Sbjct 874 GCTATCAGTTTGAGTTTAACTGGCCTCACTGTCCTCGTCTTCTTGATCATAAGC-GTCAT 932
Query 924 GCTTTTCTTGAAAAGGAAGAAGTTAATGGAAGTTCTTGAAGACTGGGAGGTTCAGTTTGG 983
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 933 GCTTTTCTTGAAAAGGAAGAAGTTAATGGAAGTTCTTGAAGACTGGGAGGTGCAGTTTGG 992
Query 984 TCCACATAGGTTTGCTTACAAGGATCTTTACATTGCCACAAAGGGTTTCAGGAACAGCGA 1043
|||||||| |||| ||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct 993 TCCACATAAGTTTTCTTACAAGGATCTCTACATTGCCACAAAGGGTTTCAAGAACAGTGA 1052
Query 1044 GCTTCTTGGTAAAGGAGGGTTTGGAAAAGTATATAAAGGTACATTATCGACGTCTAACAT 1103
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 1053 GCTTCTTGGTAAAGGAGGGTTTGGAAAAGTTTACAAAGGTACATTATTGACGTCTAACAT 1112
Query 1104 GGACATCGCGGTGAAGAAAGTTTCTCATGATTCAAGACAAGGAATGAGAGAGTTTGTGGC 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GGACATCGCGGTGAAGAAAGTTTCTCATGATTCAAGACAAGGAATGAGAGAGTTTGTGGC 1172
Query 1164 AGAGATCGCGACCATTGGGCGTCTCAGACATCCTAATCT-AGTTCGGCTTCTTGGCTACT 1222
||||||||||||||||| ||||||||||||| ||| || |||| |||||||||||||||
Sbjct 1173 CGAGATCGCGACCATTGGACGTCTCAGACATCATAA-CTTAGTTAGGCTTCTTGGCTACT 1231
Query 1223 GTAGGCGCAAAGGAGAACTCTATTTGGTTTACGACTGTATGCCAAAAGGCAGTCTTGATA 1282
| || |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1232 GCAGACGCAAAGGCGAACTCTATTTGGTCTACGATTGTATGCCAAAAGGCAGTCTTGATA 1291
Query 1283 AGTTTCTCTACCACCAACCAGAACAGAGTCTTGATTGGTCACAAAGATTCAAGATCATCA 1342
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1292 AGTTTCTTTACCATCAACCAGAACAGAGTCTTGATTGGTCACAAAGATTCAACATCATCA 1351
Query 1343 AAGATGTTGCTTCTGGTCTCTGCTATTTACACCACCAGTGGGTTCAAGTCATTATTCACA 1402
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1352 AAGATGTTGCTTCTGGTCTCTGCTATTTACACCACCAGTGGGTTCAAGTCATCATTCACA 1411
Query 1403 GAGACATTAAGCCAGCAAACGTTCTTCTTGATGATTCTATGAACGGAAAGCTCGGTGATT 1462
| |||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 1412 GGGACATTAAGCCAGCAAACATTCTCCTTGATGATTCTATGAACGGAAGGCTCGGTGATT 1471
Query 1463 TTGGTCTCGCAAAGCTCTGTGAACACGGGTTTGATCCTCAAACCTC 1508
|||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1472 TTGGTCTCGCGAAGCTTTGTGATCACGGGTTTGATCCTCAAACCTC 1517
Score = 741 bits (401), Expect = 0.0
Identities = 435/452 (96%), Gaps = 0/452 (0%)
Strand=Plus/Plus
Query 1559 GGAAGGCAAGCACAAGTTCTGATGTATTCGCGTTTGGAATACTAATGTTAGAGATTACTT 1618
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 GGAAGGCAAGCACAAGCTCTGATGTATTCGCGTTTGGAATACTAATGTTAGAGATTACTT 1582
Query 1619 GCGGGCGAAGACCCGTCTTGCCACGAGCATCTTCGCCGAGCGAGATGGTTCTTACGGATT 1678
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1583 GTGGGCGAAGACCCGTCTTGCCACGAGCATCTTCGCCGAGCGAGATGGTTCTTACTGATT 1642
Query 1679 GGGTGCTAGATTGTTGGGAAGATGACATATTGCAAGTGGTTGATGAGAGGGTAAAGCAGG 1738
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1643 GGGTGCTAGATTGTTGGGAAGATGACATATTGCAAGTGGTTGATGAGAGGGTTAAGCAGG 1702
Query 1739 ATGATAAGTACCTTGAGGAGCAAGTAGCACTGGTTCTGAAGCTCGGCTTGTTCTGTTCGC 1798
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1703 ATGATAAGTACCTTGAGGAGCAAGTAGCACTGGTTCTGAAACTCGGCTTGTTCTGTTCGC 1762
Query 1799 ATCCGGTTGCAGCCGTCAGACCAAGCATGTCGAGCGTCATCCAGTTCTTGGACGGTGTGG 1858
|||||| ||||||| | |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1763 ATCCGGGTGCAGCCATTAGACCAAGCATGTCAAGCGTCATCCAGTTCTTGGATGGTGTGG 1822
Query 1859 CTCAGCTACCAAACAACTTGTTTGACATTGTGAAAGCTAGGGAGAACGTTGGAGCCATTG 1918
|||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 1823 CTCAGCTACCAAACAACTTGCTTGACATTGTGAAAGCTCGAGAGAACGTTGGAGCCATTG 1882
Query 1919 AAGGCTTCGGTGAAGCAGCTGAGTCCCTTGCAGAGCCCTGTTCGGTGGCTACATTGACGT 1978
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1883 AAGGCTTCGGTGAAGCAGCTGAGTCCCTTGCAGAGCCTTGTTCGGTGGCTACGTTGACGT 1942
Query 1979 TTACAGAACCATTTGTCTCGCATGGGCGCTAA 2010
|||| ||||||||||||||||| |||||||||
Sbjct 1943 TTACCGAACCATTTGTCTCGCACGGGCGCTAA 1974
> Ahg316005 jgi|Araly1|316005|fgenesh1_pm.C_scaffold_2001038
Length=1983
Score = 765 bits (414), Expect = 0.0
Identities = 846/1048 (81%), Gaps = 56/1048 (5%)
Strand=Plus/Plus
Query 921 TATGCTT-TTCTTGAAAAGGAAGAAGTTAATGGAAGTTCTTGAAGACTGGGAGGTTCAGT 979
|||| || |||||||| ||||||||||| ||||||| |||| ||||||||||| ||||
Sbjct 903 TATG-TTCTTCTTGAAGAGGAAGAAGTTCTTGGAAGTGATTGAGGACTGGGAGGTACAGT 961
Query 980 TTGGTCCACATAGGTTTGCTTACAAGGATCT-TTACATTGCCAC-AAAGGGTTTCAGGAA 1037
||||||| |||| || ||||||| ||||| || ||| ||||| ||| ||||||| |||
Sbjct 962 TTGGTCCTCATAAATTCACTTACAAAGATCTCTT-CATCGCCACTAAA-GGTTTCAAGAA 1019
Query 1038 CAGCGAGCTTCTTGGTAA-AGGAGGGTTTGGAAAAGTATAT-AAAGGTA-CATTATCGAC 1094
||||||||||||||| || |||||| ||||||||||| | | || || | | ||| ||
Sbjct 1020 CAGCGAGCTTCTTGG-AAGAGGAGGTTTTGGAAAAGTCT-TCAAGGGAATC-TTACCGTT 1076
Query 1095 GTCTAACATGGA-C-ATCGCGGTGAAGAAAG-TTTCTCATGATTCAAGACAAGGAATGAG 1151
||||| || | | |||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 1077 GTCTAGTAT--ACCGATCGCGGTAAAG-AAGATTTCTCATGATTCAAGACAAGGAATGAG 1133
Query 1152 AGAGTTTGTGGCAGAGATCGCGACCATTGGGCGTCTCAGACATCCTA-ATCTAGTTCGGC 1210
|||||||||||| ||||||||||||||||| | || |||||||| | || ||||||| |
Sbjct 1134 AGAGTTTGTGGCTGAGATCGCGACCATTGGTAGACTTAGACATCC-AGATTTAGTTCGTC 1192
Query 1211 TTCTTGGCTACTGTAGGCGCAAAGGAGAACTCTATTTGGTTTACGACTGT-ATGCCAAAA 1269
|||| || ||||| || ||||||||||||||||| ||||| || |||| | ||||| |||
Sbjct 1193 TTCTCGGGTACTGCAGACGCAAAGGAGAACTCTACTTGGTCTATGACT-TCATGCCCAAA 1251
Query 1270 GGCAGTCTTGATAAGTTTCTCTACCACCAACCAGAA-CAGAGTCTTGATTGGTCACAAAG 1328
|| ||||||||||||||||| || | |||||| || || | ||||||||||||||| ||
Sbjct 1252 GGAAGTCTTGATAAGTTTCTTTATAATCAACCA-AATCAAATTCTTGATTGGTCACAGAG 1310
Query 1329 ATTCAAGATCATCAAAGATGTTGCTTCTGGTCTCTGCTATTTACACCACCAGTGGGTTCA 1388
|||||||||||||||||| ||||| || || |||||||| || || || |||||||||||
Sbjct 1311 ATTCAAGATCATCAAAGACGTTGCCTCGGGACTCTGCTACTTGCATCAGCAGTGGGTTCA 1370
Query 1389 AGTCATTATTCACAGAGACATTAAGCCAGCAAACGTTCTTCTTGATGATTCTATGAACG- 1447
|| ||||| ||||| || || ||||||||||| ||||||||||||| ||||||||
Sbjct 1371 GGTGATTATCCACAGGGATATAAAGCCAGCAAATATTCTTCTTGATGAAAATATGAACGC 1430
Query 1448 GAAAGCTCGGTGATTTTGGTCTCGCAAAGCTCTGTGAACACGGGTTTGATCCTCAAACCT 1507
||| ||||||||||||||| || || ||||| ||||| |||||| ||||| |||||||||
Sbjct 1431 GAA-GCTCGGTGATTTTGGACTTGCGAAGCTATGTGACCACGGGATTGATTCTCAAACCT 1489
Query 1508 CTAACGTGGCTGGTACGTTTGGATACATCTCACCAGAGCTTTCAAGAACAGGGAAGGCAA 1567
|||| || || ||||| || ||||| || ||||||||||| ||||||||||||||| |||
Sbjct 1490 CTAATGTCGCAGGTACATTCGGATATATATCACCAGAGCTCTCAAGAACAGGGAAGTCAA 1549
Query 1568 GCACAAGTTCTGATGTATTCGCGTTTGGAATACTAATGTTAGAGATTACTTGCGGGCGAA 1627
|||||||||||||||| || || |||||| | | ||||| |||||||||||||| |||
Sbjct 1550 GCACAAGTTCTGATGTTTTTGCATTTGGAGTGTTCATGTTGGAGATTACTTGCGGAAGAA 1609
Query 1628 GACCCGTCTT-GCCACGAGCATCTTCGCCGAGCGAGATGGTTCTT-ACGGATTGGGTGCT 1685
||||| | | ||| |||| ||| | | ||||||||||||| || || |||||||| ||
Sbjct 1610 GACCCAT-TGAGCCGCGAGGATCA-C-C-GAGCGAGATGGTT-TTGACTGATTGGGTACT 1664
Query 1686 AGATTGTTGGGA-AGATG-ACATAT-T-GCAAGTGGTTGATGAGAGGGTAAAGCAGGATG 1741
||| ||||||| || || | |||| | ||| || |||||||||| || ||| |||
Sbjct 1665 AGACTGTTGGGGCAG-TGGAGATATATTGCAGGTAGTTGATGAGAAACTAGGGCAC-ATG 1722
Query 1742 ATAAGTACCTTGAGGAGCAAGTAGCACTGGTTCTGAAGCTCGGCTTG-TTCTGTTCGCAT 1800
|| | | ||| ||| |||||| | ||||| |||| || || ||| || || ||||||
Sbjct 1723 -TA--T-C-TTGCGGAACAAGTAACTTTGGTTTTGAAACTGGGTTTGCTT-TGCTCGCAT 1776
Query 1801 CCGGTTGCAGCCG-TCAGACCAAGCATGTCGAGCGTCATCCAGTTCTTGGACGGTGTGGC 1859
|| || |||||| | |||||||||||||| ||||| ||||| ||||| |||||||| ||
Sbjct 1777 CCAGTGGCAGCCACT-AGACCAAGCATGTCAAGCGTAATCCAATTCTTAGACGGTGTAGC 1835
Query 1860 TCA-GCTACCAAACAACTTGTTTGACATTGTGAAAGCTAGGGAGAA-CGTTGGAGCCATT 1917
|| ||| || | |||||| | ||| ||| ||| ||| || | || || ||||| |||
Sbjct 1836 -CACGCTTCCTCATAACTTGCTAGACCTTGCGAATGCTCGG-ATAATCGATGGAGG-ATT 1892
Query 1918 -GAAGGC-TTCGGTGAAGCAGCTGAGTC 1943
|| | | || |||||| || |||||||
Sbjct 1893 CGATG-CATTAGGTGAAACAACTGAGTC 1919
> Ahg938998 jgi|Araly1|938998|scaffold_503189.1
Length=2021
Score = 311 bits (168), Expect = 1e-83
Identities = 518/681 (76%), Gaps = 47/681 (7%)
Strand=Plus/Plus
Query 940 AAGAA-GTTAATGGAAGTTCTTGAAGACTGGGAGGTTCAGTTTGGTCCACATAGGTTTGC 998
||||| ||||| || |||||||| || |||||| |||| | ||| || |||||||||||
Sbjct 942 AAGAAGGTTAA-GGGGGTTCTTGAGGAATGGGAGATTCAATATGGACCTCATAGGTTTGC 1000
Query 999 TTACAAGGATCTTTACATTGCCACAAAGGGTTTC-AGGA-ACAGCGAGCTTCTTGGTAAA 1056
||| ||||| |||| || |||||||||||||||| |||| | | | | |||||||| |||
Sbjct 1001 TTATAAGGAGCTTTTCAATGCCACAAAGGGTTTCAAGGAGA-AAC-AACTTCTTGGGAAA 1058
Query 1057 GGAGGGTTTGGAAAAGTATATAAAGGTACA-TTATCGACG-TCTAACATG--GACATCGC 1112
||||| ||||| |||| || ||||| ||| || || | ||| | ||| || |||||
Sbjct 1059 GGAGGATTTGGTCAAGTCTACAAAGGAACACTT-CCG-GGATCT-A-ATGCAGAGATCGC 1114
Query 1113 GGTGAAGAAAG-TTTCTCATGATTCAAGACAAGGAATGAGAGAGTTTGTGGCAGAGATCG 1171
|| || | | ||||||||||||||||||||| ||||| |||||| | || |||||
Sbjct 1115 TGTCAA-ACGGACTTCTCATGATTCAAGACAAGGGATGAGCGAGTTTCTAGCTGAGATAT 1173
Query 1172 CGACCATTGGGCGTCTCAGACATCCTAATCTAGTTC-GGCTTCTTGGC-TACTGTAGGCG 1229
||||||||||||||||||||||||||||| |||| | ||||| |||| || |||||||
Sbjct 1174 CGACCATTGGGCGTCTCAGACATCCTAATTTAGT-CAGGCTT-TTGGGGTATTGTAGGCA 1231
Query 1230 CAAAGGAGAA-CTCTATTTGGTTTACGACTGTATGCCAAAAGGCAGTCTTGATAAGTTTC 1288
|||| |||| ||||| |||||||| |||| |||||| || || || ||||| |||| ||
Sbjct 1232 TAAAG-AGAATCTCTACTTGGTTTATGACTTTATGCCTAATGGAAGCCTTGACAAGTATC 1290
Query 1289 TCTACCACCAACCAGAA-CA-GA--GTCTTGA-TTGGTCACAAAGATTCAAGATCATCAA 1343
| ||| || |||| || || | || || |||| |||| | ||||||||||||||
Sbjct 1291 TAAACCGT-AATGAGAATCAAGAACGGCT-GACTTGGGAACAACGTTTCAAGATCATCAA 1348
Query 1344 AGATGTTGCTTCTGGTCT-CTGCTATTTACACCACCAGTGGGTTCAAGTCATTATTCA-C 1401
||| ||||| ||| ||| || | | | || || | ||||| |||||||||||||| |
Sbjct 1349 AGACGTTGCAACTGCTCTACTAC-ACCTGCATCAAGAATGGGTACAAGTCATTATTCATC 1407
Query 1402 AGAGACATTAAGCCAGCAAACGTTCTTCTT-GATGATTCTATGAACG-GAAAGCTCGGTG 1459
|||| || || || || || ||| || | || | ||||| | || |||||| |
Sbjct 1408 -GAGATATCAAACCGGCTAATGTT-TTAATCGACCAGGAAATGAATGCGAG-GCTCGGGG 1464
Query 1460 ATTTTGG-TCTCGCAAAGCTCTGTGAACACGGG-TTTGATCCTCAAACCTCTAACGTGGC 1517
|||| || | | || ||||| | ||| || ||| ||||||||| || ||||| || ||
Sbjct 1465 ATTTCGGAT-TGGCGAAGCTGTATGATCA-GGGATTTGATCCTGTGACATCTAAAGTAGC 1522
Query 1518 TGGTACGTTTGGATACATCTCACCAGAGCTTTC-AAGAACAGGGAAG-GCAAGCACAAGT 1575
|| || || || || ||| |||||||| |||| ||||||||| ||| |||| ||||||
Sbjct 1523 AGGAACATTCGGGTATATCGCACCAGAG-TTTCTAAGAACAGG-AAGAGCAACCACAAGC 1580
Query 1576 TCTGATGTATT-CGCGTTTGG 1595
|||||| || ||| |||||
Sbjct 1581 ACTGATGC-TTACGCCTTTGG 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77551738820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5