BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29070.1
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491851 jgi|Araly1|491851|fgenesh2_kg.7__1284__AT4G29070.1 1628 0.0
> Ahg491851 jgi|Araly1|491851|fgenesh2_kg.7__1284__AT4G29070.1
Length=1100
Score = 1628 bits (881), Expect = 0.0
Identities = 1033/1106 (93%), Gaps = 11/1106 (1%)
Strand=Plus/Plus
Query 18 aaaaaaaCGAAAACGTGTGTCTGTCTCTTCTCGTAGCGTCTCTCA-AGCTCAGATGAATT 76
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2 AAAAAAACGAAAACGTGTGTCTGTCTCTTCTCGCAGCGTCTCTCACAGCTCAGATGAATT 61
Query 77 TTGGGTTGCCAAGTATATCTTGGTTTGGTAGCATCAGCACAAAGAAAGATGTAGCTATGA 136
||||||| |||||| | ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 62 TTGGGTTACCAAGTTTTTCTTGGTTTGGCAGCATCAGCTCAAAGAAAGATGTAGCTATGA 121
Query 137 TTGATTCCGTGACACCAACAACAACTTCTCTATTGGAACAGCCAGAGCAAGAGAAAGCAA 196
|||| |||||||| | || ||||||||||| || ||||||||||| |||| ||||| ||
Sbjct 122 TTGAAACCGTGACATCGACGACAACTTCTCTCTTAGAACAGCCAGAACAAGGGAAAGGAA 181
Query 197 CAACCTTTCTTCTCAAACAGCCAGAGAAAGAGAAAGGCTTATTTGATATAAAGATATGGA 256
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 182 CAACCTTTCTTCTGAAACAGTCAGAGAAAGAGAAAGGCTTATTTGATATAAAGATATGGA 241
Query 257 CTTGGTCCTCCTTCAGTTCAGTTCTTCCTTGGTCTGCAAATGCCTCTGATGGTAAGCAGA 316
||||||||| || | |||||||||||||||| || |||||||| ||||||| |||||||
Sbjct 242 CTTGGTCCT--TT-ACTTCAGTTCTTCCTTGGGCTACAAATGCCGCTGATGGAAAGCAGA 298
Query 317 AACCCACTACTATCAACAGAGGGTTAAAAAGGCATGCTCTTTCTCGGAG-GTCATCAAGA 375
||||||||||||| || |||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 299 AACCCACTACTATTAATAGAGGGTTAAAAAGGCATGCCCTTTCTCGGAGAG-CTTCAAGA 357
Query 376 TCAAATGGTGTGAATACTGTTTATCGGTTTAGACCTTATGTGTCTAAGGTTCCGTGGCAT 435
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 358 TCAAATGGTGTGAATACTGTTTATCGGTTTAGACCTTATGTGTCCAAGGTTCCATGGCAC 417
Query 436 ACAGGGACGAGGGCGTTTCTGTCACAGCTTTTCCCGAGATATGGACATTATTGTGGACCT 495
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 418 ACAGGAACGAGGGCGTTTCTTTCGCAGCTTTTCCCGAGATATGGACATTATTGTGGACCT 477
Query 496 AACTGGTCTAGTGGGAAAGATGGAGGTTCGATGGTTTGGGATCAGAGACCTATTGATTGG 555
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 AACTGGTCTAGTGGGAAAGATGGAGGTTCGATGGTATGGGATCAGAGACCTATTGATTGG 537
Query 556 TTAGATCATTGCTGTTATTGCCATGATATTGGTTATGATACTCATGACCAGGCAGAGTTG 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTAGATCATTGCTGTTATTGCCATGATATTGGTTATGATACTCATGACCAGGCAGAGTTG 597
Query 616 CTTAAAGCTGACATGGCGTTTCTTGAGTGTTTGGAATCAAACAAGCGTGTAGTTACTAGG 675
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 598 CTTAAAGCTGACATGGCGTTTCTCGAGTGTTTGGAATCAAATAAGCGTGTAGTTACTAGG 657
Query 676 GGAGATGCTCAAGTTGCTCACTTTTACAAAACAATGTGCATTACAGGTCTCAAGAGCATA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGAGATGCTCAAGTTGCTCACTTTTACAAAACAATGTGCATTACAGGTCTCAAGAGCATA 717
Query 736 CTAATACCCTACAGAAGTTACCTTGTGAAGATACAATACGGGCAAAATCTACTCGACTTT 795
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 718 CTAATACCCTACAGAAGCTACCTTGTGAAGATACAATACGGGCAAAATCTGCTTGACTTT 777
Query 796 GGCTGGATAGTGAGCAACCTCAGCAAGAGAAGCTGGAGTTTTCAGAAAAACTGAGACATA 855
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 GGCTGGATAGTGAGCAACCTCAGCAAGAGAAGCTGGAGTTTTCAGAAAAATTGAGACATA 837
Query 856 AGGAAGTATATCGGAGGTACTCTGTCATCCCGGTAAGCCTTTGTGGGTGTCTTCACTTTC 915
| |||| | ||||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 838 ACGAAGCAAATCGGAGTTACTCTGCCATCCTGGTAAGCCTTTGTGGGTGTCTTCACTTTC 897
Query 916 GTTTTGTACATAGAAGTCATAAAGAA-AGGAATCTGAGGATTAGGTTCTTTAGTAGTATA 974
|||||||||||||||||| |||||| |||||||||||||||||||||| | |||||||
Sbjct 898 GTTTTGTACATAGAAGTCGTAAAGAGGAGGAATCTGAGGATTAGGTTCT--A-TAGTATA 954
Query 975 GATATATATGTTTAGTATGAAGATGTGAAAACGCTAGTAAGTGTTGTGCGTCTTGTAAAC 1034
|||| |||||||||||||||| ||||| ||||| ||||||||| | |||||||| |||||
Sbjct 955 GATAAATATGTTTAGTATGAAAATGTGGAAACGTTAGTAAGTGGTATGCGTCTTTTAAAC 1014
Query 1035 CCGTTGTACATGTCTAGTAATAAACCCTTGTTTTTGAAGTCTTTT-GTTTGAATGATATA 1093
| ||||||||||| ||||||||||||||||| |||||| |||||| | ||||||| ||||
Sbjct 1015 CTGTTGTACATGTTTAGTAATAAACCCTTGTCTTTGAAATCTTTTTGGTTGAATGCTATA 1074
Query 1094 AGCTCTATCAAAGGATCATTATAACT 1119
|||||||||||||||||| |||||||
Sbjct 1075 AGCTCTATCAAAGGATCAATATAACT 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41782717032
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5