BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29100.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945115 jgi|Araly1|945115|scaffold_701344.1 2189 0.0
Ahg480460 jgi|Araly1|480460|fgenesh2_kg.3__3161__AT2G20100.1 189 6e-47
> Ahg945115 jgi|Araly1|945115|scaffold_701344.1
Length=1268
Score = 2189 bits (1185), Expect = 0.0
Identities = 1243/1271 (98%), Gaps = 3/1271 (0%)
Strand=Plus/Plus
Query 114 agagagagagagtagagaTAAAAGGTGATGAATAGAGGTGTGTTGGAGAGTTCGCCGGTT 173
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGAGAGAGTAGAGAAAAAAGGTGATGAATAGAGGTGTGTTGGAGAGTTCGCCGGTT 60
Query 174 CAGCAGCTGATGGCAGCCGGAAACCCTAATTGGTGGAACGTAAGCGGCGGCATGAGGCCA 233
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CAACAGCTGATGGCAGCCGGAAACCCTAACTGGTGGAACGTAAGCGGCGGCATGAGGCCA 120
Query 234 CCACCACCGTTGATGGGTCATCAGCAGGCGCCGTTGCCACCACATATGACTCCTAATAAC 293
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 121 CCCCCACCGTTGATGGGTCATCAGCAAGCGCCGTTGCCACCACATATGACTCCTAACAAC 180
Query 294 AATTATCTCCGACCACGGATGATGCCCACTCCCTTCCCGCACTTCTTGCCATCTCCGGCG 353
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 181 AATTATCTCCGACCACGGATGATGCCCACTCCCTTGCCGCACTTCTTACCATCTCCGGCG 240
Query 354 Acttcttcttcttcctcttcttcttcaccgtctttgcctaataaccctaatctctcttct 413
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 A---CTTCGTCTTCCTCTTCTTCTTCACCGTCTTTGCCTAATAACCCTAATCTCTCTTCT 297
Query 414 tGGCTTGAAAGCAATGATCTCCCTCCTGAGTCTTGGAGCCTTAGCCAACTTCTTTTGGGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGGCTTGAAAGCAATGATCTCCCTCCTGAGTCTTGGAGCCTTAGCCAACTTCTTTTGGGT 357
Query 474 GGATTGATGATGGGAGAGGAAGAGAGATTGGAGATGATGAACCATCATAATCATCATGAT 533
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGATTGATGATGGGGGAGGAAGAGAGATTGGAGATGATGAACCATCATAATCATCATGAT 417
Query 534 GAACAACAACACCATGGTTTTCAAGGGAAGATAAGATTGGAGAATTGGGAAGAACAAGTG 593
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 GAACAACAACACCATAGTTTTCAAGGGAAGATGCGATTGGAGAATTGGGAAGAACAAGTG 477
Query 594 TTAAGCCACCAACAAGCTTCCATGGTGGCTGTTGACATCAAACAAGAGGGTAACATTAAC 653
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 TTAAGCCGCCAACAAGCTTCCATGGTGGCTGTTGACATCAAACAAGAGAGTAACATTAAC 537
Query 654 AACAACAATGGCTATGTCATATCTTCCCCGAACTCACCTCCTAACAAATCTTGTGTTACA 713
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 AACAACAATGGCTATGTCATATCTTCTCCGAACTCACCTCCTAACAAATCTTGTGTTACA 597
Query 714 ACAACTACCACAACAAGCCTCAATAGTAACGACGATAACATCAACAACAATAATAATATG 773
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ACAACAACCACAACAAGCCTCAATAGTAACGACGATAACATCAACAACAATAATAATATG 657
Query 774 TTGGATTTCTCTAGCAATCACAATGGTCTTCACTTGTCAGAAGGGAGACACACTCCTCCG 833
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGGATTTCTCCAGCAATCACAATGGTCTTCACTTGTCAGAAGGGAGACACACTCCTCCG 717
Query 834 GATCGATCCTCTGAGTGTAACAGCTTAGAGATTGGTGGGTCTACTAATAAGAAGCCAAGG 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GATCGATCCTCTGAGTGTAACAGCTTAGAGATTGGTGGGTCTACTAATAAGAAGCCAAGG 777
Query 894 CTCCAACCTTCTCCTTCGTCACAATCAACCCTCAAGGTGAGAAAGGAGAAACTAGGAGGC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTCCAACCTTCTCCTTCGTCACAATCAACCCTCAAGGTGAGAAAGGAGAAACTAGGAGGC 837
Query 954 CGAATCGCAGCGCTTCATCAGCTAGTATCTCCATTTGGAAAGACTGACACAGCCTCTGTC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 CGAATCGCAGCGCTTCATCAGCTAGTATCTCCATTTGGAAAGACTGACACAGCATCTGTC 897
Query 1014 CTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAGGCTCTGAGTCAT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTGTCGGAAGCTATTGGATACATTAGATTCCTTCAGAGTCAAATTGAGGCTCTGAGTCAT 957
Query 1074 CCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATTTGCAAGGAGAT 1133
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 CCATACTTTGGTACGACTGCCTCGGGGAATTTGAGGCACCAACAACATTTGCAAGGAGAT 1017
Query 1134 AGGAGTTGCATATTTCCTGAGGACCCTGGTCAGCTCGTGAACGATCAGTGCATGAAGAGA 1193
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1018 AGGAGTTGCATATTTCCTGAGGACCCTGGCCAGCTCGTGAATGATCAGTGCATGAAGAGA 1077
Query 1194 AGAGGAGCTTCGTCGTCATCTACGGACAATCAAAATGCAAGTGAAGAGCCTAAGAAAGAT 1253
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGAGGAGCTTCTTCGTCATCTACGGACAATCAAAATGCAAGTGAAGAGCCTAAGAAAGAT 1137
Query 1254 CTGAGAAGTCGAGGTTTATGTCTTGTCCCAATCTCATGCACACTCCAAGTAGGCAGCGAC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTGAGAAGTCGAGGTTTATGTCTTGTCCCAATCTCATGCACACTCCAAGTAGGCAGCGAC 1197
Query 1314 AACGGCGCGGACTATTGGGCTCCAGCACTTGGCTCCGCCGGTTTCCATTGAGCCAATGAA 1373
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 AACGGCGCCGACTATTGGGCTCCAGCACTCGGCTCCGCCGGTTTCCATTGAGCCAATGAA 1257
Query 1374 ATTACGCCACG 1384
|||||||||||
Sbjct 1258 ATTACGCCACG 1268
> Ahg480460 jgi|Araly1|480460|fgenesh2_kg.3__3161__AT2G20100.1
Length=1474
Score = 189 bits (102), Expect = 6e-47
Identities = 221/274 (81%), Gaps = 25/274 (9%)
Strand=Plus/Plus
Query 358 cttcttcttcctcttcttcttcaccgtctttg------cct-a-a-taaccctaatc-tc 407
|||| ||||| |||||||||||||| |||||| ||| | | |||| |||| | ||
Sbjct 272 CTTCCTCTTCATCTTCTTCTTCACCTTCTTTGCCTCTTCCTAATAGTAACTCTAA-CTTC 330
Query 408 tcttcttGGCTTGAAA-GCAATGATCTCCCTCCTG---AGTCTTGGAGCCTTAGCCAACT 463
|||||||||||||||| | | |||||| |||| || || | |||| |||||| |||||
Sbjct 331 TCTTCTTGGCTTGAAATG-AGTGATCTGCCTCTTGACCAGCCATGGAACCTTAGTCAACT 389
Query 464 TCTTTTGGGTGGATTGATGATGGGAGAGGAAGAGAGATTGGAGATGATGAACCATCATAA 523
|| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 390 CCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGAACCATCATCA 449
Query 524 TCATCATGATGAACAACAACACCATGGTTTTCAAGGGAAGATAAGATTGGAGAATTGGGA 583
||||||| | || | |||| |||| ||| |||| ||||| | ||| ||||||||||
Sbjct 450 TCATCATCA--AA-ATCAACCCCATAGTTACCAAGAGAAGA-A-GATAC-AGAATTGGGA 503
Query 584 AGAACAAGTGTTAAGCCACCAACAAGCTTCCATG 617
||||||||| || || |||||| |||||||||
Sbjct 504 AGAACAAGTTTTGAGGCACCAA---GCTTCCATG 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5