BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29120.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491846 jgi|Araly1|491846|fgenesh2_kg.7__1279__AT4G29120.1 1690 0.0
> Ahg491846 jgi|Araly1|491846|fgenesh2_kg.7__1279__AT4G29120.1
Length=1089
Score = 1690 bits (915), Expect = 0.0
Identities = 986/1021 (97%), Gaps = 1/1021 (0%)
Strand=Plus/Plus
Query 2 CAATGCCACttctcctccgtcgatttccctctccctccgtcgtctcctccttcttcctcc 61
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 CAATGCCACTACTCCTCCGTCGATTTCTCTCTCCCTCCGTCGTCTCCTCCTTCTTCCTCC 60
Query 62 gtcgctcAATGGCTTCCTCAACAATCTCCTCGGATATAATCACTCCATCAAACACCAAAA 121
|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 61 GTCGCTCAATGGCTTCCTCATCAATCTCCTCTGATCCCATCACTCCATCAAACACCAAAA 120
Query 122 TCGGATGGATCGGAACCGGAGTCATGGGCCGATCAATGTGTGGACACTTAATCAAAGCCG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGATGGATCGGAACCGGAGTCATGGGCCGATCAATGTGTGGACACTTAATCAAAGCCG 180
Query 182 GTTACACAGTCACCGTCTTCAATCGAACCATCTCCAAAGCTCAAACTCTCATCGACATGG 241
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTACACCGTGACCGTCTTCAATCGAACCATCTCCAAAGCTCAAACTCTCATCGACATGG 240
Query 242 GTGCTAACGTCGCCGACTCACCAAACTCAGTCGCTGAACAATCCGACGTCGTTTTCACCA 301
|||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GTGCTAACCTCGCTGACTCACCAAACTCAGTCGCTGCTCAATCCGACGTCGTTTTCACCA 300
Query 302 TCGTTGGTTATCCTTCCGATGTCCGTCACGTCCTTCTCGATCCAAAGTCCGGAGCTTTAT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGTTGGTTATCCTTCCGATGTCCGTCACGTCCTTCTCGATCCAAAGTCCGGAGCTTTAT 360
Query 362 CTGGTCTCCGTCAAGGAGGTGTTCTCGTTGATATGACTACTTCTGAGCCTTCTTTAGCAG 421
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 361 CTGGTCTCCGTCAAGGAGGTGTTCTCGTTGATATGACTACTTCAGAGCCTTCTTTAGCTG 420
Query 422 AGGAGATAGCTAAAGCTGCTTCCTTTAAGAATTGTTTCTCAATAGACGCTCCTGTCTCAG 481
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 421 AGGAGATAGCTAAAGCTGCTTCCTTTAAGAATTGTTTCTCAATAGATGCTCCGGTCTCAG 480
Query 482 GTGGAGATTTAGGAGCTAAGAATGGGAAGCTATCTATATTCGCCGGAGGTGATGAAACCA 541
||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 481 GTGGAGATTTAGGAGCTAAGAATGGCAAGTTATCTATATTCGCCGGAGGAGATGAAACCA 540
Query 542 CCGTGAAACGTTTAGATCCGTTGTTTTCGTTAATGGGTAAAGTCAACTTCATGGGAACAA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCGTGAAACGTTTAGATCCGTTGTTTTCGTTAATGGGTAAAGTCAACTTCATGGGAACAA 600
Query 602 GTGGGAAAGGTCAATTTGCGAAATTGGCTAATCAGATAACTATTGCTTCGACTATGTTAG 661
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 601 GTGGGAAAGGTCAATTTGCGAAGTTGGCTAATCAGATTACAATTGCTTCGACTATGTTAG 660
Query 662 GACTTGTGGAAGGTTTGATTTATGCTCATAAAGCTGGACTTGATGTTAAGAAGTTTCTTG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACTTGTGGAAGGTTTGATTTATGCTCATAAAGCTGGACTTGATGTTAAGAAGTTTCTTG 720
Query 722 AAGCGATTTCTACTGGTGCTGCTGGTTCTAAGTCTATAGATTTGTATGGAGATAGGATTC 781
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGCGATTTCTACTGGAGCTGCTGGTTCTAAGTCTATAGATTTGTATGGAGATAGGATTC 780
Query 782 TGAAGAGGGATTTTGATCCTGGTTTTTATGTGAATCATTTTGTGAAAGATTTAGGGATTT 841
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 781 TGAAGAGGGATTTTGATCCAGGGTTTTATGTGAATCATTTTGTGAAAGATTTAGGGATTT 840
Query 842 GTTTGAATGAATGTCAGAGGATGGGTTTGGCTTTGCCTGGTTTAGCTCTTGCTCAACAGC 901
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 841 GTTTGAATGAATGTCAGAGGATGGGATTGGCTTTGCCTGGTTTAGCTCTTGCTCAACAGC 900
Query 902 TTTACTTGTCTCTTAAGGCTCATGGTGAAGGTGATCTTGGTACTCAAGCTCTTCTCTTGG 961
||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct 901 TTTACTTGTCTCTTAAGGCACATGGTGAAGGTGGTCTTGGTACTCAAGCTCTTATCTTGG 960
Query 962 CTCTTGAACGTCTCAACAATGTCTCTGTTCAATCATCTGACTCTTGATTTAGGTTCT-GT 1020
||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||| ||
Sbjct 961 CTCTTGAGCGTCTCAACAATGTATCTGTTCAACCATCTGTCTCTTGATTTAGGTTCTTGT 1020
Query 1021 T 1021
|
Sbjct 1021 T 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5