BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29140.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945110 jgi|Araly1|945110|scaffold_701339.1 2695 0.0
> Ahg945110 jgi|Araly1|945110|scaffold_701339.1
Length=1643
Score = 2695 bits (1459), Expect = 0.0
Identities = 1582/1640 (96%), Gaps = 13/1640 (1%)
Strand=Plus/Plus
Query 214 catcatcatcaccgtcatgtgtaacccatcaacaacaacaacaaccaccGGTTCAGAGAA 273
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 5 CATCACCATCACCGTCATGTGTAACCCAT---CAACAACAACAACCACCGGTTCAGAGAA 61
Query 274 CCAAGAATCTCGAACCGGACTCTTCCTCGATCTCTTCTCGATCAATAGCTTTGAACCCAC 333
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CCAAGAATCTCGAACCGGAATCTTCCTCGATCTCTTCTCGATCAATAGCTTTGAACCCAC 121
Query 334 AAAGAGAAATCTCCGGCATTGTGAGAACAGAGGATCTCCTCTTATGGCAGAAGCTGTAAC 393
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 122 AAAGAGAAATCTCCGGCATTGCGAGAACAGAGGATCTCCTCTTATGGCAGAAGCTGTAAC 181
Query 394 AGAGGCGAAATCTCTCTTCACGTTAGCTTTTCCGATCGCCGTGACGGCTCTTGTCCTCTA 453
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 182 AGAGGCGAAATCTCTCTTCACGCTAGCTTTTCCGATCGCCGTGACGGCTCTAGTCCTCTA 241
Query 454 CCTACGCTCAGCCGTATCAATGTTTTTCTTGGGTCAACTTGGTGACCTCGAATTAGCCGC 513
||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 242 CCTACGCTCCGCCGTATCAATGTTTTTCTTGGGTCGACTAGGTGACCTCGAATTAGCCGC 301
Query 514 CGGTTCACTCGCCATTGCCTTTGCTAACATAACCGGTTACTCTGTTTTATCCGGTTTAGC 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CGGTTCACTCGCCATTGCCTTTGCTAACATAACCGGTTACTCTGTTTTATCCGGTTTAGC 361
Query 574 TCTTGGTATGGAACCACTCTGTTCTCAAGCCTTCGGTGCTCACCGCTTCAAACTCCTTTC 633
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 ACTTGGTATGGAACCACTCTGTTCTCAAGCCTTCGGTGCTCACCGCTTCAAACTCCTCTC 421
Query 634 CCTAACCCTCCATCGAACCGTGGTTTTTCTCTTGGTTTGTTGCGTACCGATCTCGGTTCT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CCTAACCCTCCATCGAACCGTGGTTTTTCTCTTGGTTTGTTGCGTACCGATCTCGGTTCT 481
Query 694 CTGGTTTAACGTCGGCAAAATATCGGTTTACCTTCACCAAGACCCCGACATCGCGAAATT 753
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 482 CTGGTTAAACGTCGGCAAAATCTCGGTTTACCTTCACCAAGACCCCGACATCGCTAAATT 541
Query 754 AGCTCAGACATATCTCATCTTCTCCCTACCTGATCTTCTCACCAACACTCTTCTTCATCC 813
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 542 AGCTCAGACATATCTCATCTTCTCCCTCCCTGATCTTCTCACCAACACTCTTCTCCATCC 601
Query 814 AATCAGAATCTACCTTCGTGCTCAAGGCATCATTCACCCCGTAACCCTAGCTTCTCTCTC 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AATCAGAATCTACCTTCGTGCTCAAGGCATCATTCACCCCGTAACCCTAGCTTCTCTCTC 661
Query 874 CGGCGCTGTTTTTCACCTCCCGGCTAATCTTTTCTTAGTCTCTTACCTCCGTCTTGGTTT 933
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 662 CGGCGCTGTTTTTCACCTCCCGGCTAATCTTTTCTTAGTCTCTTACCTCCGTCTTGGTCT 721
Query 934 AACCGGCGTAGCAGTCGCTTCCTCCATCACAAACATCTTCGTCGTTGCTTTCCTCGTTTG 993
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 722 AACCGGCGTAGCAGTCGCTTCCTCTATCACAAACATCTTCGTCGTAGCTTTCCTCGTTTG 781
Query 994 CTACGTCTGGGCGAGTGGTCTTCACGCGCCTACATGGACTGACCCGACCCGTGATTGTTT 1053
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 782 CTACGTCTGGGCGAGTGGTCTCCACGCGCCTACATGGACTGACCCGACCCGTGATTGTTT 841
Query 1054 CCGCGGGTGGGCTCCGTTGCTGCGTCTCGCGGGACCAAGCTGTGTCTCCGTGTGTTTGGA 1113
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 842 CCGCGGGTGGGCTCCGTTGCTGCGTCTCGCGGGTCCGAGCTGTGTCTCCGTGTGTTTGGA 901
Query 1114 ATGGTGGTGGTACGAGATCATGATCGTTTTGTGTGGTTTGCTCGTGAATCCAAGATCGAC 1173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GTGGTGGTGGTACGAGATCATGATCGTTTTGTGTGGTTTGCTCGTGAATCCAAGATCGAC 961
Query 1174 GGTGGCTGCTATGGGCGTTTTGATCCAGACGACGTCGTTTCTTTATGTTTTCCCGTCTTC 1233
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 962 GGTGGCTGCTATGGGTGTTTTGATCCAGACGACGTCGTTTCTTTACGTTTTCCCGTCTTC 1021
Query 1234 TCTTAGCTTTGCTGTCTCAACTAGAGTCGGAAACGAACTTGGAGCCAACCGTCCCAAGAC 1293
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1022 TCTTAGCTTTGCTGTCTCAACTAGAGTCGGGAACGAGCTTGGAGCGAACCGTCCCAAGAC 1081
Query 1294 AGCAAAGCTAACGGCTACGGTGGCTATCGTTTTCGCGGCGGTTACAGGGATTATAGCGGC 1353
|| |||||||| || |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1082 GGCGAAGCTAACAGCCACGGTGGCTATCGTTTTCGCGGCGGTCACAGGGATTACAGCGGC 1141
Query 1354 GGCGTTTGCTTACTCAGTCAGAAACGCTTGGGGAAGGAT-TTTCACCGGAGACAAAGAGA 1412
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1142 GGCGTTTGCTTACTCAGTCAGAAACGCTTGGGGGAGGATATTT-ACCGGAGACAAAGAGA 1200
Query 1413 TACTCCAGCTAACAGCGGCGGCGTTACCGATATTAGGTCTATGCGAGATCGGAAACTGTC 1472
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1201 TACTCCAGCTAACAGCGGCGGCGTTACCGATATTGGGTTTATGCGAGATCGGAAACTGTC 1260
Query 1473 CTCAGACGGTGGGATGCGGCGTCGTGAGAGGAACAGCACGACCGTCAACGGCGGCGAACG 1532
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1261 CTCAGACGGTGGGATGCGGAGTCGTGAGAGGAACAGCACGGCCGTCAACGGCGGCGAACG 1320
Query 1533 TGAACCTTGG-AGCGTTTTATCTGGTGGGCATGCCGGTGGCAGTGGGTCTCGGGTTTTGG 1591
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 TGAAC-TTGGGAGCGTTTTATCTGGTGGGCATGCCGGTCGCAGTGGGTCTCGGGTTTTGG 1379
Query 1592 GCCGGAATTGGGTTTAATGGGCTTTGGGTAGGACTACTTGCGGCGCAGATTAGCTGCGCA 1651
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCCGGAATTGGGTTTACTGGGCTTTGGGTAGGACTACTTGCGGCGCAGATTAGCTGCGCA 1439
Query 1652 GGTCTTATGATGTACGTGGTGGGGACCACAGATTGGGAATCGGAGGCTAAGAAGGCGCAG 1711
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGTCTTATGATGTACGTTGTGGGGACCACAGATTGGGAATCGGAGGCTAAGAAGGCGCAG 1499
Query 1712 ACGCTAACGTGCGCTGAGACTGTAGAGAATGATATTATTAAGGCGGTGGTGGCGAGTACT 1771
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1500 ACGCTAACGTGCGCCGAGACTGTAGAGAATGATATTATTAAGGCGGTGGTGGCGAACACT 1559
Query 1772 ATAG---ACG--G-TGAGTGCGATGAGGCTGAGCCGTTGATTCGCATCACGGTGCTTTAT 1825
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 ATAGGTGACGACGGTGAGTGCGATGAGGCTGAGCCGTTGATTCGCATCACGGTGCTTTAT 1619
Query 1826 TAATATTAATTAAGACAAAA 1845
||||||||||||||| ||||
Sbjct 1620 TAATATTAATTAAGATAAAA 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5