BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29150.1 Length=1374 Score E Sequences producing significant alignments: (Bits) Value Ahg491843 jgi|Araly1|491843|fgenesh2_kg.7__1276__AT4G29150.1 1860 0.0 > Ahg491843 jgi|Araly1|491843|fgenesh2_kg.7__1276__AT4G29150.1 Length=1275 Score = 1860 bits (1007), Expect = 0.0 Identities = 1150/1218 (94%), Gaps = 14/1218 (1%) Strand=Plus/Plus Query 1 ATTATGAGAAAGAATCTCACAAAATTGACCAGAGT-AA-AGAGAGAGACAAAAATGGGTC 58 |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1 ATTACGAGAAAGAATCTCACAAAATTGACCAGAGTAAAGAGAGAGAGACAAAAATGGGTC 60 Query 59 GAGCAACGAGGTGGTTCAAGGGTTTGTTCGGAATCAAACCTTCCTCTTGTT-C--CGGCA 115 |||| |||||||||||||||||||||||||||||||||||||| || |||| | ||||| Sbjct 61 GAGCTACGAGGTGGTTCAAGGGTTTGTTCGGAATCAAACCTTCTTCATGTTCCGGCGGCA 120 Query 116 CCGACTCCGGCACTATTTCTAACCGCCTTGACCGCTCTTTATGCGACAGCTACGAGACTA 175 ||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 121 CCGACTCCGGCGCAATTTCCAACCGCCTTGACCGCTCTTTATGCGACAGCTACGAGACGA 180 Query 176 TACCACCTAACATCTCCGAGAAAGAAGCTGCGTGGCTAAGGTCCTTCTACGCAGCGGGAG 235 |||||||||| |||||||||||||| ||||||||| ||||||| || ||||| || |||| Sbjct 181 TACCACCTAATATCTCCGAGAAAGAGGCTGCGTGGTTAAGGTCGTTTTACGCGGCTGGAG 240 Query 236 AGGAGGAAAAAGAGCGTAGAACGCATGCAATTGCGGTTGCTGCCGCGACAGCTGCTGCAG 295 ||||||| |||||||||||||||||||||||||| ||||| || || ||||||||||||| Sbjct 241 AGGAGGAGAAAGAGCGTAGAACGCATGCAATTGCTGTTGCCGCAGCAACAGCTGCTGCAG 300 Query 296 CTGACGCAGCGGTTGCGGCGGCTAAAGCGGCTGCTGCGGTTGTTAGGCTCCAAGGTCAAG 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTGACGCAGCGGTTGCGGCGGCTAAAGCGGCTGCTGCGGTTGTTAGGCTCCAAGGTCAAG 360 Query 356 GCAAGAGTGGTCCGTTAGGAGGTGGCAAAA-GCCGTGAGCATCGTGCTGCTATGCAGATC 414 | ||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||| Sbjct 361 GAAAGAGTGGTCCGTTAGGAGGTGG-AAAATGCCGTGAGAATCGTGCCGCTATGCAGATC 419 Query 415 CAATGTGCCTTTAGAGGCTACTTGGCGAGAAAAGCGTTGAGAGCGTTGAGAGGAGTGGTG 474 || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 CAGTGTACCTTTAGAGGCTACTTGGCGAGAAAAGCGTTAAGAGCGTTGAGAGGAGTGGTG 479 Query 475 AAGATTCAAGCTTTAGTGAGAGGTTTTTTGGTACGGAATCAAGCGGCGGCGACTCTCCGG 534 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct 480 AAGATTCAAGCTTTAGTGAGAGGATTTTTGGTACGGAAACAAGCGGCGGCGACCCTCCGG 539 Query 535 AGTATGGAAGCACTTGTTAGAGCTCAGAA-AACTGTTAAGATTCAAAGAGCTCTCCGTCG 593 |||||||||||||||||||||||||| || ||||||||| |||| ||||||||||| || Sbjct 540 AGTATGGAAGCACTTGTTAGAGCTCA-AACTACTGTTAAGTTTCAGAGAGCTCTCCGCCG 598 Query 594 TAACGGAAATGCTGCTCCGGCGAGAAAATCCACGGAAAGATTCTCCGGATCTTTGGAGAA 653 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 599 TATCGGAAATGCTGCTCCGGCGAGAAAATCCACGGAAAGATTCTCCGGATCTTTGGAAAA 658 Query 654 TCGAAACAACGGCGAAGAGACAGCTAAGATAGTGGAGGTAGATACAGGGACCCGACCCGG 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TCGAAACAACGGCGAAGAGACAGCTAAGATAGTGGAGGTAGATACAGGGACCCGACCCGG 718 Query 714 GACTTACAGAATCCGAGCACCCGTTTTATCCGGGTCGGATTTCTTAGACAACCCGTTTCG 773 |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 719 GACTTATAGGATCCGAGCACCCGTTTTAACCGGGTCGGATTTCTTAGACAACCCGTTTCG 778 Query 774 ACGTACGCTTTCTTCACCGCTCTCGGGTCGAGTCCCACCGCGTCTATCAATGCCTAAACC 833 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ACGTACGCTCTCTTCACCGCTCTCGGGTCGAGTCCCACCGCGTCTATCAATGCCTAAACC 838 Query 834 TGAATGGGAAGAGTGCAGTAGCAAGTTCCCGACGGCGCAGAGCACACCTCGTTTTTCTGG 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 839 TGAATGGGAAGAGTGCAGTAGCAAGTTCCCGACGGCGCAGAGCACACCTCGTTTCTCCGG 898 Query 894 TGGGTCTCCGGCGAGGAGCGTGTGCTGCTCTGGTGGCGGAGTAGAGGCGGAGGTGGATAC 953 |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 899 TGGGTCTCCGGCGAGGAGTGTATGCTGCTCTGGTGGCGGAGTAGAGGCGGAGGTTGATAC 958 Query 954 AGAGGCTGATGCTAACCGGTTCTGTTTCTTGTCGGGGGAATTTAACTCGGGTTACATGGC 1013 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GGAAGCTGATGCTCACCGGTTCTGTTTCTTGTCGGGGGAATTTAACTCGGGTTACATGGC 1018 Query 1014 GGATACAACGTCGTTTAGGGCGAAACTGAGGTCGCATAGTGCACCGAGACAGAGACCAGA 1073 |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1019 GGATACAACGTCATTTAGGGCGAAACTGAGGTCGCATAGCGCACCGAGACAGAGACCGGA 1078 Query 1074 GAGTAATGCTTCAG-CTGGCGGATGGAGGAGGAGTATCGGCGGCGGTGGTG-T-T-AGGA 1129 |||||||| ||| | | ||||||||||| |||||||||||||||||||||| | | |||| Sbjct 1079 GAGTAATGTTTCCGGC-GGCGGATGGAGAAGGAGTATCGGCGGCGGTGGTGGTCTTAGGA 1137 Query 1130 TGCAGAGACAGTCGTGTTCGGGTGTCAGAGAAGCTGTGGTCGGGAATATCGAGAGGCGTA 1189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 TGCAGAGACAGTCGTGTTCGGGTGTCAGAGAAGCTGTGGTCGGGAATATCGAGAGGCGTA 1197 Query 1190 GGATGCGTTGGTGATTCT 1207 |||||| ||||||||||| Sbjct 1198 GGATGCATTGGTGATTCT 1215 Score = 100 bits (54), Expect = 2e-20 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1239 GTTAATTAGGGGAGTAATGTTATTAATTTAATATAGTTTGATATTATTATAGTTTTCTAA 1298 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1216 GTTAATTAGGGGAGTAATGTTATTAATTTTATATAGTTTGATATTCTTATAGTTTTCTAA 1275 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51427815033 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5