BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29150.1
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491843 jgi|Araly1|491843|fgenesh2_kg.7__1276__AT4G29150.1 1860 0.0
> Ahg491843 jgi|Araly1|491843|fgenesh2_kg.7__1276__AT4G29150.1
Length=1275
Score = 1860 bits (1007), Expect = 0.0
Identities = 1150/1218 (94%), Gaps = 14/1218 (1%)
Strand=Plus/Plus
Query 1 ATTATGAGAAAGAATCTCACAAAATTGACCAGAGT-AA-AGAGAGAGACAAAAATGGGTC 58
|||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 ATTACGAGAAAGAATCTCACAAAATTGACCAGAGTAAAGAGAGAGAGACAAAAATGGGTC 60
Query 59 GAGCAACGAGGTGGTTCAAGGGTTTGTTCGGAATCAAACCTTCCTCTTGTT-C--CGGCA 115
|||| |||||||||||||||||||||||||||||||||||||| || |||| | |||||
Sbjct 61 GAGCTACGAGGTGGTTCAAGGGTTTGTTCGGAATCAAACCTTCTTCATGTTCCGGCGGCA 120
Query 116 CCGACTCCGGCACTATTTCTAACCGCCTTGACCGCTCTTTATGCGACAGCTACGAGACTA 175
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CCGACTCCGGCGCAATTTCCAACCGCCTTGACCGCTCTTTATGCGACAGCTACGAGACGA 180
Query 176 TACCACCTAACATCTCCGAGAAAGAAGCTGCGTGGCTAAGGTCCTTCTACGCAGCGGGAG 235
|||||||||| |||||||||||||| ||||||||| ||||||| || ||||| || ||||
Sbjct 181 TACCACCTAATATCTCCGAGAAAGAGGCTGCGTGGTTAAGGTCGTTTTACGCGGCTGGAG 240
Query 236 AGGAGGAAAAAGAGCGTAGAACGCATGCAATTGCGGTTGCTGCCGCGACAGCTGCTGCAG 295
||||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||
Sbjct 241 AGGAGGAGAAAGAGCGTAGAACGCATGCAATTGCTGTTGCCGCAGCAACAGCTGCTGCAG 300
Query 296 CTGACGCAGCGGTTGCGGCGGCTAAAGCGGCTGCTGCGGTTGTTAGGCTCCAAGGTCAAG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGACGCAGCGGTTGCGGCGGCTAAAGCGGCTGCTGCGGTTGTTAGGCTCCAAGGTCAAG 360
Query 356 GCAAGAGTGGTCCGTTAGGAGGTGGCAAAA-GCCGTGAGCATCGTGCTGCTATGCAGATC 414
| ||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||
Sbjct 361 GAAAGAGTGGTCCGTTAGGAGGTGG-AAAATGCCGTGAGAATCGTGCCGCTATGCAGATC 419
Query 415 CAATGTGCCTTTAGAGGCTACTTGGCGAGAAAAGCGTTGAGAGCGTTGAGAGGAGTGGTG 474
|| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 CAGTGTACCTTTAGAGGCTACTTGGCGAGAAAAGCGTTAAGAGCGTTGAGAGGAGTGGTG 479
Query 475 AAGATTCAAGCTTTAGTGAGAGGTTTTTTGGTACGGAATCAAGCGGCGGCGACTCTCCGG 534
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 480 AAGATTCAAGCTTTAGTGAGAGGATTTTTGGTACGGAAACAAGCGGCGGCGACCCTCCGG 539
Query 535 AGTATGGAAGCACTTGTTAGAGCTCAGAA-AACTGTTAAGATTCAAAGAGCTCTCCGTCG 593
|||||||||||||||||||||||||| || ||||||||| |||| ||||||||||| ||
Sbjct 540 AGTATGGAAGCACTTGTTAGAGCTCA-AACTACTGTTAAGTTTCAGAGAGCTCTCCGCCG 598
Query 594 TAACGGAAATGCTGCTCCGGCGAGAAAATCCACGGAAAGATTCTCCGGATCTTTGGAGAA 653
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 TATCGGAAATGCTGCTCCGGCGAGAAAATCCACGGAAAGATTCTCCGGATCTTTGGAAAA 658
Query 654 TCGAAACAACGGCGAAGAGACAGCTAAGATAGTGGAGGTAGATACAGGGACCCGACCCGG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCGAAACAACGGCGAAGAGACAGCTAAGATAGTGGAGGTAGATACAGGGACCCGACCCGG 718
Query 714 GACTTACAGAATCCGAGCACCCGTTTTATCCGGGTCGGATTTCTTAGACAACCCGTTTCG 773
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 GACTTATAGGATCCGAGCACCCGTTTTAACCGGGTCGGATTTCTTAGACAACCCGTTTCG 778
Query 774 ACGTACGCTTTCTTCACCGCTCTCGGGTCGAGTCCCACCGCGTCTATCAATGCCTAAACC 833
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACGTACGCTCTCTTCACCGCTCTCGGGTCGAGTCCCACCGCGTCTATCAATGCCTAAACC 838
Query 834 TGAATGGGAAGAGTGCAGTAGCAAGTTCCCGACGGCGCAGAGCACACCTCGTTTTTCTGG 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 839 TGAATGGGAAGAGTGCAGTAGCAAGTTCCCGACGGCGCAGAGCACACCTCGTTTCTCCGG 898
Query 894 TGGGTCTCCGGCGAGGAGCGTGTGCTGCTCTGGTGGCGGAGTAGAGGCGGAGGTGGATAC 953
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 899 TGGGTCTCCGGCGAGGAGTGTATGCTGCTCTGGTGGCGGAGTAGAGGCGGAGGTTGATAC 958
Query 954 AGAGGCTGATGCTAACCGGTTCTGTTTCTTGTCGGGGGAATTTAACTCGGGTTACATGGC 1013
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGAAGCTGATGCTCACCGGTTCTGTTTCTTGTCGGGGGAATTTAACTCGGGTTACATGGC 1018
Query 1014 GGATACAACGTCGTTTAGGGCGAAACTGAGGTCGCATAGTGCACCGAGACAGAGACCAGA 1073
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1019 GGATACAACGTCATTTAGGGCGAAACTGAGGTCGCATAGCGCACCGAGACAGAGACCGGA 1078
Query 1074 GAGTAATGCTTCAG-CTGGCGGATGGAGGAGGAGTATCGGCGGCGGTGGTG-T-T-AGGA 1129
|||||||| ||| | | ||||||||||| |||||||||||||||||||||| | | ||||
Sbjct 1079 GAGTAATGTTTCCGGC-GGCGGATGGAGAAGGAGTATCGGCGGCGGTGGTGGTCTTAGGA 1137
Query 1130 TGCAGAGACAGTCGTGTTCGGGTGTCAGAGAAGCTGTGGTCGGGAATATCGAGAGGCGTA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGCAGAGACAGTCGTGTTCGGGTGTCAGAGAAGCTGTGGTCGGGAATATCGAGAGGCGTA 1197
Query 1190 GGATGCGTTGGTGATTCT 1207
|||||| |||||||||||
Sbjct 1198 GGATGCATTGGTGATTCT 1215
Score = 100 bits (54), Expect = 2e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1239 GTTAATTAGGGGAGTAATGTTATTAATTTAATATAGTTTGATATTATTATAGTTTTCTAA 1298
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1216 GTTAATTAGGGGAGTAATGTTATTAATTTTATATAGTTTGATATTCTTATAGTTTTCTAA 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5