BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29170.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491840 jgi|Araly1|491840|fgenesh2_kg.7__1273__AT4G29170.1 1338 0.0
> Ahg491840 jgi|Araly1|491840|fgenesh2_kg.7__1273__AT4G29170.1
Length=889
Score = 1338 bits (724), Expect = 0.0
Identities = 836/890 (94%), Gaps = 8/890 (1%)
Strand=Plus/Plus
Query 1 CCGCTTAAGTTTTCAAGGCTTCTTCTACAATTCTCTCATTTCGAATTTGATA-A-agaga 58
||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1 CCGCTTAAGTTTTCAAGGCTTCTTCAACAATTCTCTCATTTCGAATTTGATAGAGAGAGA 60
Query 59 g--gagacgata-g-tgaggga-agagagtgagagagagCTGTAGCAGTGTTTGAAATCC 113
| |||| || | | | || || |||||| ||||||||| |||||||| |||||||||||
Sbjct 61 GTAGAGAGGAGACGAT-AGTGAGAGAGAGAGAGAGAGAGGTGTAGCAGAGTTTGAAATCC 119
Query 114 TTTGGATTGCATCACCAGGAGCAAGAGATCACGATGTCTAAGAAACGGGGACTTTCGCTG 173
|||||||||||||| ||| | ||||||||||||||||| ||||||||||| |||||||||
Sbjct 120 TTTGGATTGCATCATCAGAAACAAGAGATCACGATGTCAAAGAAACGGGGGCTTTCGCTG 179
Query 174 GAGGAGAAACGAGAGAAGATGCTTCAGATATTCTATGAGTCTCAAGACTTCTTCCTACTA 233
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGGAGAAACGGGAGAAGATGCTTCAGATATTCTATGAGTCTCAAGACTTCTTCCTACTT 239
Query 234 AAGGAACTTGAGAAGATGGGGCCGAAGAAGGGTGTAATTAGTCAGTCTGTGAAAGATGTT 293
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 240 AAGGAACTTGAGAAGATGGGGCCAAAGAGGGGTGTAATTAGTCAGTCTGTGAAAGATGTT 299
Query 294 ATCCAGAGTTTAGTCGATGATGATCTTGTTGCGAAAGACAAGATTGGAATTTCTATCTAC 353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 ATCCAGAGTTTAGTCGATGATGATCTTGTCGCGAAAGACAAGATTGGAATTTCTATCTAC 359
Query 354 TTTTGGAGCCTTCCCAGCTGTGCTGGCAATCAACTTAGGAGTGTTCGCCAGAAACTTGAA 413
|||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 360 TTTTGGAGCCTTCCCAGCTGTGCTGGCAATCAACTTAGGAGTATCCGTCAGAAACTTGAA 419
Query 414 TCTGATCTTCAGGGTAGTAACAAAAGGTTAGCAGAACTTGTTGATCAGTGTGAGGCCCTA 473
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 420 TCTGATCTTCAGGGTAGTAACAAAAGGCTAGCAGAACTTGTTGATCAGTGTGAGACCCTA 479
Query 474 AAGAAGGGAAGGGAAGAATCGGAGGAACGAACAGAGGCCTTGACGCAACTCAAAGATATT 533
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 AAGAAGGGAAGGGAAGAATCGGAGGAACGAACAGAGGCCTTGACGCAACTAAAAGATATT 539
Query 534 GAAAAGAAACACAAAGATCTGAAGAACGAGATGGTACAATTTGCTGACAACGATCCAGCT 593
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAAAAGAAACACATAGAGCTGAAGAACGAGATGGTACAATTTGCTGACAACGATCCAGCT 599
Query 594 ACTTTGGAGGCAAAGAGGAATGCAATTGAAGTTGCTCACCAGTCGGCTAACAGATGGACA 653
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTTTGGAGGCAATTAGGAAAGCAATTGAAGTTGCTCACCAGTCGGCTAACAGATGGACA 659
Query 654 GATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAG 713
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATAACATCTTCACATTGAAACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAG 719
Query 714 CTAGAACATCTATACACGGAGGCGGGAATCACTGAGGACTTTGATTACATAGAGTTATCA 773
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 720 CTAGAACATCTATACACGGAGGCCGGAATCACTGAGGACTTTGATTACATTGAGTTATCT 779
Query 774 TCATTCCCTTTGAGCTCATCCCATGAAGCTGATACCGCAAAGCAGCTAGTACAAGATGAA 833
|||||||| ||||||||||| || || |||||||| |||| |||||||| | ||||||||
Sbjct 780 TCATTCCCGTTGAGCTCATCACACGAGGCTGATACTGCAAGGCAGCTAGGAGAAGATGAA 839
Query 834 GCTTAGTTCTAATACTCTCCAGCATAACAGTTAAAGAAACAATAGCTTAA 883
|||||||||||| |||||||||||||||| ||||||| || |||||||||
Sbjct 840 GCTTAGTTCTAAAACTCTCCAGCATAACAATTAAAGACACTATAGCTTAA 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5