BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29180.2
Length=2945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918641 jgi|Araly1|918641|Al_scaffold_0228_2 183 5e-45
Ahg900635 jgi|Araly1|900635|Al_scaffold_0004_1285 178 2e-43
Ahg945073 jgi|Araly1|945073|scaffold_701302.1 117 5e-25
Ahg905243 jgi|Araly1|905243|Al_scaffold_0003_2371 115 2e-24
Ahg900753 jgi|Araly1|900753|Al_scaffold_0004_1403 73.1 1e-11
> Ahg918641 jgi|Araly1|918641|Al_scaffold_0228_2
Length=546
Score = 183 bits (99), Expect = 5e-45
Identities = 204/250 (82%), Gaps = 25/250 (10%)
Strand=Plus/Plus
Query 1111 CAGCACAATCTCTGGATGAATTTTACACCAGAATTGACGATGTTCAAGCCATAGAAAGCA 1170
|||||||||||||| ||||||||| ||||| | | | | | || |||||||||||||
Sbjct 119 CAGCACAATCTCTGAATGAATTTTCCACCACCA-T--CAAAGACCACGCCATAGAAAGCA 175
Query 1171 TAAAATCAACGTATAAAGTGAATAAGATTTGGACTGGTGATCCTTGCTCTCCCAGACTCT 1230
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
Sbjct 176 TAAAATCAACGTATAAAGTGAATAAGGTTTGGACTGGTAATCCTTGCTCTCCAAGACTAT 235
Query 1231 TCCCTTGGGAAGGTATTGGATGCAGCTACAACACTTCTAGTTATCAAATCAAGTCCCTAA 1290
||||||||||||||| | | | || | || | |||||||||||| | |
Sbjct 236 TCCCTTGGGAAGGTACT---T-C---TA-A----TT--AC----CAAATCAAGTCCATGA 277
Query 1291 ATCTTAGTTCAAGT-GGATTACATGGACCAATAGC-GTTCGCATTTAGAAATCTCTCCCT 1348
||||||| ||||| || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct 278 GTCTTAGTACAAGTTGG-TTACAAGGACCAATAGCCGT-CTCATTTAGAAATCTCTCCCT 335
Query 1349 TCTTGAGTCA 1358
||||||||||
Sbjct 336 TCTTGAGTCA 345
> Ahg900635 jgi|Araly1|900635|Al_scaffold_0004_1285
Length=519
Score = 178 bits (96), Expect = 2e-43
Identities = 203/250 (81%), Gaps = 25/250 (10%)
Strand=Plus/Plus
Query 1111 CAGCACAATCTCTGGATGAATTTTACACCAGAATTGACGATGTTCAAGCCATAGAAAGCA 1170
||||||||||||| ||||||||| ||||| | | | | | || |||||||||||||
Sbjct 152 CAGCACAATCTCTAAATGAATTTTCCACCACCA-T--CAAAGACCACGCCATAGAAAGCA 208
Query 1171 TAAAATCAACGTATAAAGTGAATAAGATTTGGACTGGTGATCCTTGCTCTCCCAGACTCT 1230
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
Sbjct 209 TAAAATCAACGTATAAAGTGAATAAGGTTTGGACTGGTAATCCTTGCTCTCCAAGACTAT 268
Query 1231 TCCCTTGGGAAGGTATTGGATGCAGCTACAACACTTCTAGTTATCAAATCAAGTCCCTAA 1290
||||||||||||||| | | | || | || | |||||||||||| | |
Sbjct 269 TCCCTTGGGAAGGTACT---T-C---TA-A----TT--AC----CAAATCAAGTCCATGA 310
Query 1291 ATCTTAGTTCAAGT-GGATTACATGGACCAATAGC-GTTCGCATTTAGAAATCTCTCCCT 1348
||||||| ||||| || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct 311 GTCTTAGTACAAGTTGG-TTACAAGGACCAATAGCCGT-CTCATTTAGAAATCTCTCCCT 368
Query 1349 TCTTGAGTCA 1358
||||||||||
Sbjct 369 TCTTGAGTCA 378
> Ahg945073 jgi|Araly1|945073|scaffold_701302.1
Length=389
Score = 117 bits (63), Expect = 5e-25
Identities = 91/103 (88%), Gaps = 7/103 (7%)
Strand=Plus/Plus
Query 1810 AAATTGCTGTAAAGATGATCAACGATTCTTCTTTTGGAAAATCTAAAGGATCTtcatcat 1869
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 7 AAATTGCTGTAAAGATGATCAACGATTCTTCATTTGGAAAATCTAAAGGATCTTCAAC-T 65
Query 1870 catcatcatcatcCCAGGTCTCCAAAG--AATTCCAAGTCGAG 1910
||||||||||||| || || | | | ||||||||||||||
Sbjct 66 --TCATCATCATCCCGGG-CTTCTA-GCCAATTCCAAGTCGAG 104
> Ahg905243 jgi|Araly1|905243|Al_scaffold_0003_2371
Length=375
Score = 115 bits (62), Expect = 2e-24
Identities = 110/130 (85%), Gaps = 16/130 (12%)
Strand=Plus/Plus
Query 1644 GAAAGCAAAAT-AATGTATTCAGGAGCATATTCAGGACCACTTCTGCCTTCGGGAAAGAG 1702
||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 261 GAAAG-AAAATGAGTGTATTCAGGAGCTTATTCAGGACCACTTCTGCCTTCGGGAAAGAG 319
Query 1703 AAGGTTCACATATAGTGAAGTCTCTAGTATTACAAACAACTTCAATAAAGTGATTGGTAA 1762
||||||||||| || | | | | || | |||||||||||| || ||||| |||||
Sbjct 320 AAGGTTCACAT---GT-A-G-CA-T--TA--A-AAACAACTTCAA-AA-GTGATCGGTAA 365
Query 1763 AGGAGGGTTT 1772
||||||||||
Sbjct 366 AGGAGGGTTT 375
> Ahg900753 jgi|Araly1|900753|Al_scaffold_0004_1403
Length=408
Score = 73.1 bits (39), Expect = 1e-11
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1676 AGGACCACTTCTGCCTTCGGGAAAGAGAAGGTTCACATATAG 1717
|||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 AGGACCACTTCTGCCTTCGGGAAAGAGAAGGTTCACATGTAG 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111185425155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5