BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29190.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491837 jgi|Araly1|491837|fgenesh2_kg.7__1270__AT4G29190.1 1674 0.0
Ahg480488 jgi|Araly1|480488|fgenesh2_kg.3__3189__AT2G19810.1 654 0.0
> Ahg491837 jgi|Araly1|491837|fgenesh2_kg.7__1270__AT4G29190.1
Length=1307
Score = 1674 bits (906), Expect = 0.0
Identities = 1059/1132 (94%), Gaps = 13/1132 (1%)
Strand=Plus/Plus
Query 62 TTAAAGAAGATGATGATCGGAGAAACTCGCAGGACTTATCCCACTGTTGAAATACCTCCA 121
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1 TTAAAGAAGATGATGATCGGAGAAACTCGCCGGACTTATCCTACTGTTGAAATACCTCCA 60
Query 122 TGGCC-GGTACTTGAAGAGCTTACAACGTCGGAGtttttttCTCCGGTGATGAATAGTCC 180
||||| | | | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TGGCCAGTTTC-TGAAGAGCTTACGGCGTCGGAGTTTTTTTCTCCGGTGATGAATAGTCC 119
Query 181 AGATTGTAGCATGCTTGAAGCTTTGGCGGGGTTGCAGCGTTAT-TTGCCGTCTAACGAAC 239
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 120 AGATTGTAGCATGCTTGAAGCTTTGGCGGCGTTGCAGCGTTATCTT-CCGTCTAACGAAC 178
Query 240 CGGATCCGGAGTCAT-ACCCGGATCTATTGGGTCCGGATTCACCAATCGATGCTTACTCA 298
|||||||||| || | |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 179 CGGATCCGGATTC-TGACCCGGATTTATTGGGTCCTGATTCACCAATCGATGCTTACTCA 237
Query 299 TGCGACCATTTCCGTATGTACGATTTCAAAGTCAGGAGGTGTGCTCGTGGCCGGAGTCAT 358
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 238 TGTGACCATTTCCGTATGTACGATTTCAAAGTCCGGAGGTGTGCTCGTGGCCGGAGTCAT 297
Query 359 GATTGGACGGAGTGTCCGTACGCTCATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGG 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 GATTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGG 357
Query 419 AAGTACCATTACTCTGGTACGGCTTGTCCTGATTTTCGTAAAGGTGGCTGCAAGAAAGGT 478
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 358 AAGTACCATTACTCCGGTACGGCTTGTCCTGATTTTCGCAAAGGTGGTTGCAAGAAAGGT 417
Query 479 GACTCTTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGT 538
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 GATTCTTGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGG 477
Query 539 ACTCAGCCGTGTAAAGACGGTGGTAACTGTCTCCGGAAAATTTGTTTCTTTGCTCATTCA 598
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 478 ACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGGAAAGTTTGTTTCTTTGCTCATTCA 537
Query 599 CCGGATCAGCTT-AGGTTTTTACATACTCGGAGCCCTGA-CAGAGTTGATTCTTTTGACG 656
||||||||| || |||||||||| | ||||||||| || | | ||||||||||| ||||
Sbjct 538 CCGGATCAG-TTGAGGTTTTTACCGAGTCGGAGCCCCGATCGG-GTTGATTCTTTCGACG 595
Query 657 TTTCGTCTCCGATTCGTGCTAGAGCATTTCAGCTGTCGATTTCTCCGGTTTCTGGTTCGC 716
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 596 TTTCGTCTCCGATTCGTGCTAGAGCGTTTCAGCTCTCGATTTCGCCGGTTTCTGGTTCGC 655
Query 717 CACCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAGTCACTGAGTCGAT 776
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 656 CGCCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAATCACTTAGTCGAT 715
Query 777 CTCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAATTTACAGTTTAATT 836
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 CTCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAACTTACAGTTTAATA 775
Query 837 CGGTAAAATCATTTCCTCGTAACAATCCTTTATTCGGATTCGGGTCGCCCCGTGGATCGA 896
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGGTAAAATCATTTCCTCATAACAATCCTTTATTCGGATTCGGGTCGCCCCGTGGATCGA 835
Query 897 TCTTGGGTCCTGGGTTTCAGTCTCTGCCTACAACACCGACCCGACCAGGGAATCTGGATA 956
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 836 TTTTGGGTCCTGGGTTTCAGTCTCTGCCTACAACACCGACCCGACCCGGAAATCTGGATA 895
Query 957 TTTGGGAGTATGGTTTGGAGGAAGAACCCGTAATGGAGCGTGTCGTTGAGTCGGGTCGTG 1016
||||||| ||||| || |||||||| || ||||||||||| |||||||||||||||||||
Sbjct 896 TTTGGGACTATGGGTTAGAGGAAGAGCCTGTAATGGAGCGGGTCGTTGAGTCGGGTCGTG 955
Query 1017 AGCTACGAGAAAAGATGCGCGAGAAACTGCACAAGGAGAATTGCATGGATCGAGTTG-CC 1075
|||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||
Sbjct 956 AGCTACGAGAAAAGATGCGCGAGAAACTACACAAGGAGAATTGCTTGGATCGGGTTGACC 1015
Query 1076 CAGGATCCGGATCAGAATTTGGGTGAGGCTCCTGATGTCGGGTGGGTATCTGACCTGCTC 1135
| ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 1016 C-GGATCCGGATCAGAAGTCGGGTGATGCTCCTGATGTCGGGTGGGTATCTGACCTGCTG 1074
Query 1136 ATGTAAAGaaaaaaaTCTGACC-GTATTTCGAAGTCTCATTGGCTTTTTTGG 1186
|||||||||| ||| | ||| |||||||||||||||||||| ||||||||
Sbjct 1075 ATGTAAAGAATGAAACCCGACTTGTATTTCGAAGTCTCATTGGTTTTTTTGG 1126
Score = 171 bits (92), Expect = 2e-41
Identities = 124/139 (89%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 1282 ATTTTGGGGCCTGATTTTTCTAAGATGATCGTTGTATAGATGTGCCTTAGGGTTTTAATT 1341
|||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1172 ATTTTGGGTCCTGATTTTTCTGAGA-AATCGTTGTATAGATGTGCCTTAGGGTTTTAATT 1230
Query 1342 ATGAAATAGTATTA-ATATAATCGTGTTTTATAAGACTATAATGTTAGATTGTAACCACT 1400
||| || | || || ||||| |||||||||||||| ||||| ||||| || |||||||||
Sbjct 1231 ATGGAACATTAATATATATA-TCGTGTTTTATAAGGCTATATTGTTAAAT-GTAACCACT 1288
Query 1401 TGGTACTAATCTATGAATG 1419
|| ||||||||||||||||
Sbjct 1289 TGTTACTAATCTATGAATG 1307
Score = 84.2 bits (45), Expect = 2e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1206 GGAAGGGATCTTAGTGTGTTCATATTATTTTATTTACTAATCTCGTATTTT 1256
||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1126 GGAAGAGATCTTAGTGTGTTCATATTATTTTATTTACTAATTTCGTATTTT 1176
> Ahg480488 jgi|Araly1|480488|fgenesh2_kg.3__3189__AT2G19810.1
Length=1442
Score = 654 bits (354), Expect = 0.0
Identities = 784/985 (80%), Gaps = 56/985 (6%)
Strand=Plus/Plus
Query 186 GTAGCATGCTTGAAGCTTTGGCGGGGTTGCAGCGTTAT-TTGCCGTCTAACGAACCGGAT 244
|||| ||| | ||||||||||| | ||| || |||||| || ||||||||||||||||||
Sbjct 186 GTAGTATGATGGAAGCTTTGGCTGCGTTACAACGTTATCTT-CCGTCTAACGAACCGGAT 244
Query 245 CCGGAGTCAT-ACCCGGATCTATTGGGTCCGGATTCACCAATCGATGCTTACTCATGCGA 303
||||| || | | |||||||| | ||||||||||||||| ||||||||||| || || ||
Sbjct 245 CCGGATTC-TGATCCGGATCTCTCGGGTCCGGATTCACCCATCGATGCTTATTCGTGTGA 303
Query 304 CCATTTCCGTATGTACGA-TTTCAAAGTCAGGA-GGTGTGCTCGTGGCCGGAGTCATGAT 361
||||| || ||||| || ||| ||||| | || | || |||||||| ||||||||||||
Sbjct 304 TCATTTTCGGATGTATGAGTTT-AAAGTGA-GACGTTGCGCTCGTGGTCGGAGTCATGAT 361
Query 362 TGGACGGAGTGTCCGTACGCTCATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGGAAG 421
|||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||
Sbjct 362 TGGACGGAGTGTCCTTATGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAG 421
Query 422 TACCATTACTCTGGTACGGCTTGTCCTGATTTTCGTAAAGGTGGCTGCAAGAAAGGTGAC 481
| ||||| || |||||||| |||||||| |||||||||||||| ||||||| ||| |||
Sbjct 422 TTTCATTATTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTGGTTGCAAGAGAGGAGAC 481
Query 482 TCTTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACT 541
| ||||||||| ||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 482 GCGTGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCGCGTTACCGGACT 541
Query 542 CAGCCGTGTAAAGACGGTGGTAACTGTCTCCGGAAAATTTGTTTCTTTGCTCATTCACCG 601
|||||||||||||||||||||||||||| ||| |||||||||| |||||||| |||
Sbjct 542 CAGCCGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTCGCTCATTCGCCG 601
Query 602 GATCAGCTTAGGTTTTTACATACTCGGAGCCCTGA-CAGAGTTGATTCTTTTGACG-TTT 659
|||||||||||| |||| | || || |||||||| | | |||||||| || |||| |||
Sbjct 602 GATCAGCTTAGGGTTTTGCCTAGTCAAAGCCCTGATC-GTGTTGATTCATTCGACGGTTT 660
Query 660 CGTCTCCGATTCGTGCTAGAGCATTTCAGCTGT-CGATTTCTCCGGTT-TCTGGTTCGCC 717
||||||||||||| ||||| |||||| | | ||||||| ||| | ||| || ||
Sbjct 661 -GTCTCCGATTCGT---AGAGCGTTTCAGTT-TACGATTTCGCCG-TCGTCTAACTCCCC 714
Query 718 ACCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAGTCACTGAGTCGATC 777
||| ||||||| ||| ||||||||| || || ||| | ||| | ||||||||| ||
Sbjct 715 GCCGGTGAGTCCTCGAGGTGACTCGGACTCGTCGCCG-T--CTC--T-ACTGAGTCGTTC 768
Query 778 TCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAATTTACAGTTTAATTC 837
||||| ||| || | ||||||||||||| | || | |||||| | ||| ||| |
Sbjct 769 ACTCGGATCTAATTTGGGAAACGACGTCGTTGCGTCCCTGAGGAATCTGCAGCTTAGTAA 828
Query 838 GGTAAAATCA-TTTC--C-TCGTA-A-CAATCCTTT---AT--T-CGGAT-T-----CGG 879
|| || || |||| | ||||| | |||| | | | ||||| | |||
Sbjct 829 AGTGAAGTCTCTTTCTTCGTCGTACAACAATGAAATCGGAGGATACGGATCTGGGTTCGG 888
Query 880 GTCGCCCCGTGGATCGATCTTGGGTCCTGGGTTTC--AGTCTCTGCCTACAACACCGACC 937
|||||| ||||||||| | ||||||||||| |||| || || | || ||||||||||||
Sbjct 889 GTCGCCTCGTGGATCGGTTTTGGGTCCTGGTTTTCGGAG-CT-TACCAACAACACCGACC 946
Query 938 CGACCAGGGAATCTGGATATTTGGGAGTATGGTTTGGAGGAAGAACCCGTAATGGAGCGT 997
||||| ||| | || | |||||||| ||||||||||||||||||| | ||||| ||
Sbjct 947 CGACCCGGGTTTATGAACATTTGGGAAAATGGTTTGGAGGAAGAACCGGCGATGGAACGG 1006
Query 998 GTCGTTGAGTCGGGTCGTGAGCTACGAGAAAAGATGCGCGAGAAACTGCA-CAAGGAGAA 1056
|||| ||||||||||||| || |||| || || | |||| ||| | ||| |||||
Sbjct 1007 GTCG---AGTCGGGTCGTGAACTGCGAGCGCAGCTGTTCCAGAAGCTG-AGCAAAGAGAA 1062
Query 1057 TTGCATGGATCGAGTTG-CCCAGGATCCGGATCAGA-ATTTGGGTGAGGCTCCTGATGTC 1114
|||||||| ||| |||| ||| ||||||||||||| | |||||| ||||||||||||
Sbjct 1063 TTGCATGGGTCGTGTTGACCC-GGATCCGGATCAGGGAGC-GGGTGATGCTCCTGATGTC 1120
Query 1115 GGGTGGGTATCTGACCTGCTCATGT 1139
|||||||| |||||| || | ||||
Sbjct 1121 GGGTGGGTCTCTGACTTGGTTATGT 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5