BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29210.1
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491836 jgi|Araly1|491836|fgenesh2_kg.7__1269__AT4G29210.1 2920 0.0
> Ahg491836 jgi|Araly1|491836|fgenesh2_kg.7__1269__AT4G29210.1
Length=2122
Score = 2920 bits (1581), Expect = 0.0
Identities = 1984/2168 (92%), Gaps = 69/2168 (3%)
Strand=Plus/Plus
Query 24 CTAGATCGAAAGGGAAAAGGAGATAGAGATTGAAGATGCGTGACGCAATCATCGCCGATC 83
|||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||
Sbjct 1 CTAGATCGAAAGGGAAAA-GAGAT----A--GAAGATGGGTGACGCAATCATCGCCGATC 53
Query 84 CTCTTCTG-GCCATCGACCATGAAACAGTCGC--AG-AGAAGAAG-A-AA-CAGAGCAAA 136
|||||||| | |||||||||| |||||||||| || |||||||| | || ||||||||
Sbjct 54 CTCTTCTGTG-CATCGACCATCAAACAGTCGCAGAGAAGAAGAAGAAGAAGCAGAGCAAC 112
Query 137 AATCTAAAGATTTCTCTTTTACTG---CTTCTGATTCTCT-TAGCAACTTCAGGTTATTA 192
|||||||| || ||||||| ||| ||||||||||| | ||||||||||||| | ||
Sbjct 113 TATCTAAAGCTTGCTCTTTTTCTGCTTCTTCTGATTCT-TGTAGCAACTTCAGG-T-TT- 168
Query 193 TAGCTTTAGTGACAACATTACAACAGTTTTCTTATCAAGACAAGCTATTGATGATGATCA 252
|||||||| |||||| | |||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 169 TAGCTTTAATGACAAGAGTACAACAGTTTTGTTATCAAGACAAGCAATTCATGATGATCA 228
Query 253 TAGTCTTAGCCTTGGAACCATCAGTGACGTGGTTGAATCTGAGAATGGTGTTGTGGCTGC 312
||||||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 229 TAGTCTTAGCCATGGAACCGTCAGTGACATGGTTGAATCAGAGAATGGTGTTGTGGCTGC 288
Query 313 TGACGACGCTCGATGTTCCGAGATCGGTGCCTCTGTTCTTAGAAGTGGCGGTCATGCGGT 372
||||||||||||||| |||||| |||||||||||||||||||||| ||||| || |||||
Sbjct 289 TGACGACGCTCGATGCTCCGAGGTCGGTGCCTCTGTTCTTAGAAGAGGCGGCCACGCGGT 348
Query 373 GGACGCCGCCGTGGCTATTACTTTATGTGTTGGTGTTGTTAATCCAATGTCTAGTGGAAT 432
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 349 GGATGCCGCCGTGGCTATTACTTTATGTGTTGGTGTTGTTAATCCAATGTCGAGTGGAAT 408
Query 433 CGGTGGTGGTTCTTTCTTGATTGTTAGCTCGCAGAAAGATTCCAAAGCTGAGGCTTTTGA 492
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 409 CGGTGGTGGTTCTTTCTTGATTGTTAGCTCGCAGAAAGATTCCAAAGTTGAGGCTTTTGA 468
Query 493 CATGAGAGAAACTGCTCCATTAGCTGCTTCTAAGGATATGTATAAGAACGATGCTAGTGC 552
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 469 CATGAGAGAAACTGCTCCATTAGCTGCTTCTAAGGATATGTATAAGAATGATGCGAGTGC 528
Query 553 GAAATCGTTGGGCGCATTGTCTATGGGAGTTCCGGGAGAGATAGCTGGACTTTACGAGGC 612
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 529 GAAATCGTTGGGGGCATTGTCGATGGGAGTTCCGGGAGAGATAGCTGGACTTTACGAGGC 588
Query 613 TTGGAAACGGTATGGCCGTCT-TCCGTGGAAACCGCTTTTCGAGCCGGCTATTAAGCTGG 671
||||||||||||||||||||| || |||||||||||||||||||||||| ||| || |||
Sbjct 589 TTGGAAACGGTATGGCCGTCTCTC-GTGGAAACCGCTTTTCGAGCCGGCGATTGAGTTGG 647
Query 672 CTCG-GGACGG-TTTCGTGGTGTATCCGTATCTCGGAAAGGCCATATCGA-CCAAAGTTG 728
|||| || ||| ||| |||||| |||||||||| |||||||||||||||| ||| | ||
Sbjct 648 CTCGAGG-CGGGTTT-GTGGTGCATCCGTATCTTGGAAAGGCCATATCGAGCCAC-GCTG 704
Query 729 CGATGATACTTAAAGATCCGGGTATGCGGAGTGTCTTCTCAAGAAACGGACAGGTTTTGA 788
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 705 CGATGATACTTAAAGATCCGGGTTTGCGGAGTGTCTTCTCAAGAAATGGACAGGTTTTGA 764
Query 789 AAACCGGTGAGACTTGCTATAACCCGGAGCTAGCTCAGAGTCTTGAGACTATTTCTGAGC 848
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 765 AACCCGGTGAGACTTGCTATAACCCGGAGCTTGCTCGGAGTCTTGAGACTATTTCTGAGC 824
Query 849 AAGGCCCGGGAGCGTTCTACAACGGGACAGTAGGCGAGAAGCTTGTTAAAGATGTGAAGA 908
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 825 AAGGACCGGGAGCGTTCTACAACGGGACAGTAGGCGAGAAGCTTGTTAACGATGTGAAAA 884
Query 909 AGGCGGGAGGGATCATAACGATGGATGATCTAAGAAGTTAT-AAGGTCCGAGTTACCGAT 967
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 885 AGGCGGGAGGGATCATAACGATGGATGATCTAAGAAGTTATGAAG-TCCGAGTGACCGAT 943
Query 968 GCAATGTCTGTGGATGTTATGGGTTATACGGTTCATGGAATGCCGCCTCCTTCGGGCGGT 1027
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 944 GCAATGTCTGTGGATGTTATGGGTTATACGGTTCACGGAATGCCGCCTCCTTCGGGCGGT 1003
Query 1028 ACAGTCGGTTTTTCGATGGTTAT-GAATATCTTGGATAGTTACTCGAATCTTTACACTGC 1086
||||||||||||||||||||||| || ||||||||||||||| ||||| || ||||||||
Sbjct 1004 ACAGTCGGTTTTTCGATGGTTATTGA-TATCTTGGATAGTTATTCGAACCTCTACACTGC 1062
Query 1087 TTCGGGAAGAGAGCTCGGGCTGCACCGTTTGATAGAAGCAATGAAACATATGTTTGCAGC 1146
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1063 TTCTGGAAGAGATCTCGGGCTGCACCGATTGATAGAAGCAATGAAACATATGTTTGCAGC 1122
Query 1147 TCGTATGGATCTTGGAGACCCTGAGTTCGTTAATGTAACAAACTCTATGAACCAAATGCT 1206
||| |||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1123 TCGGATGGATCTCGGAGACCCTGGGTTCGTTAACATAACAAACGCTATGAACCAAATGCT 1182
Query 1207 CTCGAAGGCTCACGCGGAAGAAATCCAAAAGAGGATTTTCGACAACACGACATTCCCACC 1266
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1183 CTCGAAGACTCACGCGGAAGAAATCCGAAAGAGGATTTTCGACAACACGACATTCCCACC 1242
Query 1267 TGAGTACTATATGAACCGGTGGAGCCAACTCAGGGACCAAGGAACGAGTCATTTCTGCGT 1326
||||||||| ||||||||||||||||||| ||||||||||| || |||||||||||| |
Sbjct 1243 CGAGTACTATTTGAACCGGTGGAGCCAACTTAGGGACCAAGGGACAAGTCATTTCTGCAT 1302
Query 1327 TGTGGATGCGGATCGCAACAGTGTGTCGATGACCTCAACCGTGAATTACCGTTTTGGTGC 1386
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1303 TGTGGATGCGGATCGAAACAGTGTGTCAATGACCTCAACCGTGAATTACGGTTTTGGTGC 1362
Query 1387 CGGGGTGTTATCACCTTCAACTGGAATTGTACTTAACAACGAGATGGATGATTTCTCAAC 1446
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1363 CGGGGTGTTATCACCTTCCACCGGAATTGTACTTAACAACGAGATGGATGATTTCTCTGT 1422
Query 1447 ACCCACGGAAATCACTCCCGACATGCTTCCTCCAGCGCCTACAAATTTCATTGAACCAAA 1506
||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1423 ACCTGCGGAAATCACTCCCGACAGGCTTCCTCCTGCGCCTACAAATTTCATTGAACCAAA 1482
Query 1507 CAAAAGACCATTATCTTCCATGACACCTCTCGTGATCACCAAGGATGGTGAGTTCGTGGC 1566
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1483 CAAAAGACCATTATCTTCCATGACACCTCTCGTGGTTACCAAGGATGGTGAGTTCGTGGC 1542
Query 1567 AGCGCTTGGAGGAGCTGGTGGAATGCATATAATTCCAGCGGTGCTTCAAGTGTTTCTTAA 1626
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1543 AGCGCTTGGAGGAGCTGGCGGAATGCATATAATTCCGGCGGTGCTTCAAGTGTTCCTTAA 1602
Query 1627 TTGCTTTGTGTTGAATATGAAACCTAAAGAAGCAGTAGAGAGTGCCAGAATATACCATAG 1686
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1603 TTGCTTTGTGTTGAATATGAAACCTAAACAAGCAGTAGAGAGTGCCAGAATTTACCATAG 1662
Query 1687 ATTGATACCAAATGTTGTTTCCTATGAGAACTTCACCACGATCAATGGCGATCACATAGG 1746
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1663 GTTGATACCGAATGTTGTTTCCTATGAGAACTTCACCGCGATCAATGGCGATCACATAGG 1722
Query 1747 GGTTTCAGAAGATACCAAGATGTTTCTAGCAGAGA-GAGGACATGAGCT-AAAGGAGCTA 1804
||||||||||||||||||||||||||| || | || | |||||||| || |||| || ||
Sbjct 1723 GGTTTCAGAAGATACCAAGATGTTTCTGGCTG-GAAGGGGACATGAACTCAAAGCAG-TA 1780
Query 1805 TCAGGTGGAGCTATAGTTCAACTTATTGTTCAGAGTTTCaaggaagagaaagaagaagaa 1864
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1781 TCAGGTGGAGCTATTGTTCAACTTATTGTTCAGAGTTTCAAGGAAGAAAAAGAAGAAGAG 1840
Query 1865 atgattattgaaattggaaggaaaatcggaaagaaatcgaaaCCATTAAAGGGCTTACTT 1924
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1841 ATGATTATTGAAATTGGAAGGAAAATTGGAAAGAAATCGAAACCATCCAAGGGCTTACTT 1900
Query 1925 ACTGCAGTTAGTGATCCTCGAAAAGATGGAAAGCCAGCTGCAGTTTGATTTCGTTATTAA 1984
||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1901 ACTGCAGTTTGTGATCCTCGAAAAGATGGGAAGCCAGCTGCAGTTTGATTTC-T------ 1953
Query 1985 GCTAATTACAAATTTCCTCATTCAAGTCCCATTCTCTATCATGTAAATTTGAATAAAGTT 2044
| | || |||||||||||||| | ||||||||||| |||| |||||||
Sbjct 1954 -C------C---TT-----ATTCAAGTCCCATTTTATATCATGTAAAGTTGATTAAAGTT 1998
Query 2045 ACATGAGCCTCAAAGACTCAGCGTGGGATATATACAGAAGCAAAGTTGTAGTTGGAACCA 2104
| |||||| | ||||| | || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1999 ATATGAGCTTGAAAGATTGAGTGTGGGATATATACAGAAGCAAAGTTGTAGTTGGAAACA 2058
Query 2105 AGAGTTGTTACATTATT---CTCACAAG-AGTTAtctctctctcttctctTTGCTTGAAG 2160
|||||| |||||||||| |||||||| |||||||||||| ||| || || |||||| |
Sbjct 2059 AGAGTTATTACATTATTATTCTCACAAGGAGTTATCTCTCT-TCT-CT-TT-GCTTGATG 2114
Query 2161 AATATTAT 2168
|||| |||
Sbjct 2115 AATACTAT 2122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81741665770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5