BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29220.1
Length=2068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945103 jgi|Araly1|945103|scaffold_701332.1 2370 0.0
Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1 547 1e-154
Ahg491836 jgi|Araly1|491836|fgenesh2_kg.7__1269__AT4G29210.1 185 9e-46
> Ahg945103 jgi|Araly1|945103|scaffold_701332.1
Length=1459
Score = 2370 bits (1283), Expect = 0.0
Identities = 1404/1463 (96%), Gaps = 5/1463 (0%)
Strand=Plus/Plus
Query 353 AGTCTCCGAAAAGGTTGGTTATGTCATCTTCTGTTCCAAACTCGGACCGGAAGATTGTTA 412
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AGTCTCCGACAAGGTTGGTTATGTCATCTTCTGTCCCAAACTCGGACCGGAAGATTGTTA 60
Query 413 CTGGTCCCGCCGGTTATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATC 472
|||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 61 CTGGTCCCGCAGGTTATATTCTTGAAGACGTTCCTCATTTCACCGACGACTTCCCTGATC 120
Query 473 ATCCTACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAGCAGTATT 532
| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 121 ACCCTACATATCCAAATCCATTACAAGACAACGCAGCTTACTCTGTTGTTAGGCAGTATT 180
Query 533 TTGTCGATGAGGATGACACGGTTCCTCAAAAAATAGTAGTTCATCCTGATAGTCCTAGGG 592
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TCGTCGATGAGGATGACACGGTTCCTCAAAAGATAGTAGTTCATCCTGATAGTCCTAGGG 240
Query 593 GAACGCATTTCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTC 652
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACACATTTCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTC 300
Query 653 TTGCTTGCATTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGA 712
|||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 301 TTGCGTGCATTGTTACGTGTGGCGGTTTGTGTCCCGGGCTTAATACTGTGATCAGAGAGA 360
Query 713 TAGTTTGTGGATTATCTTATATGTATGGTGTCAAGAGAATCCTTGGCATTGATGGAGGTT 772
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 361 TAGTTTGTGGTTTATCTTACATGTATGGTGTCAAGAGAATCCTTGGAATTGATGGAGGTT 420
Query 773 ACAGAGGATTTTACGCGAGAAACACAATCCATTTGGACTTAAAAACAGTGAATGATATCC 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 ACAGAGGATTTTACGCGAGAAACACAATCCATTTGGACTTAAAAACAGTGAATGATATTC 480
Query 833 ATAGAAGCGGAGGAACTATCCTCGGGACTTCAAGAGGCGGTCACAACACCACCAAGATAG 892
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 481 ATAGAAGCGGAGGAACTATCCTCGGGACGTCAAGAGGCGGTCACGACACCACCAAGATAG 540
Query 893 TAGATAGTATTCAAGATCGCGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCAC 952
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TAGATAGTATTCAAGATCGTGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCAC 600
Query 953 AGAAAGGAGCAGCTGCTATATTCGAGGAGATTAGGAAACGCA-AGCTTAAAGTTGCGGTT 1011
|||||||||| |||||||||||| ||||| |||||||||| | ||||||||||||||||
Sbjct 601 AGAAAGGAGCTGCTGCTATATTCAAGGAGGTTAGGAAACG-AGGGCTTAAAGTTGCGGTT 659
Query 1012 GCCGGAATCCCGAAAACAATTGACAATGACATTCCTATTATCGATAGATCTTTCGGGTTT 1071
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct 660 GCCGGAATCCCGAAAACAATCGACAATGATATTCCTATTATCGATAGATCTTTTGGATTT 719
Query 1072 GACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCTACAAGC 1131
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 GACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCCCATGTCGAAGCTACAAGC 779
Query 1132 TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGGATTCATTGCAATG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGGATTCATTGCAATG 839
Query 1192 CATGCCACTCTAGCCAGCCGAGATGTGGACTGTTGCTTGATCCCGGAATCTCCATTTTTT 1251
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 840 TATGCAACTCTAGCCAGCCGAGATGTGGACTGTTGCTTGATCCCGGAATCACCATTTTTT 899
Query 1252 CTTGAAGGCTCGGGCGGGCTTTTTGAATTTATCGATAAACGGTTAAAGGAGAGTGGTCAT 1311
||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 900 CTTGAAGGCCCGGGCGGGCTTTTTGAATTTATTGATAAACGGCTAAAGGAGAGTGGTCAC 959
Query 1312 ATGGTGATTGTAATTGCAGAAGGTGCGGGACAAGATCTGTTGTCTGAAAGCATGAAAGAG 1371
||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct 960 ATGGTGATTGTAATTGCAGAAGGCGCGGGACAAGATCTGTTGGCTGAAAGCATGGAAGAG 1019
Query 1372 TCCACAACTCTCAAAGATGCCTCTGGAAACAAACTTCTTCAAGACATTGGCCTATGGATC 1431
||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1020 TCCACAATTCTGAAAGATGCCTCTGGAAACAAACTTCTACAAGACATTGGCCTGTGGATC 1079
Query 1432 TCCCAAAGAATCAAGGATCATTTTGCCAAGAAGATGACCCTTACCCTCAAATATATAGAT 1491
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCCCAAAGGATCAAGGATCATTTTGCCAAGAAGATGACCCTTACCCTCAAATATATAGAT 1139
Query 1492 CCAACCTACATGATACGAGCTGTTCCGAGCAATGCATCAGACAATGTATGCTGCACGCTT 1551
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1140 CCAACCTACATGATACGGGCTATTCCGAGCAATGCATCAGACAATGTATGCTGCACACTA 1199
Query 1552 TTAGCTCAAAGCGCGGTTCATGGAGTGATGGCTGGTTACAATGGTTTCACTGTTGGCCTT 1611
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTAGCTCAAAGCGCCGTTCATGGAGTGATGGCTGGTTACAATGGTTTCACTGTTGGCCTT 1259
Query 1612 GTCAATGGAAGACATACTTACATTCCCTTCAATAGGATCACGGAGAAACAGAACAAGGTG 1671
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 GTCAATGGAAGACATACTTACATTCCCTTTTATAGGATCACGGAGAAACAGAACAAGGTG 1319
Query 1672 GTGATCACTGACAGAATGTGGGCGAGGCTTTTGTCTTCGACGAACCAACCGAGTTTCATG 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTGATCACTGACAGAATGTGGGCGAGGCTTTTGTCTTCGACGAACCAACCGAGTTTCATG 1379
Query 1732 AAGCAAGCTGACAAGATCCACTCAAACCAGTTGGTTGGTGAACCAGGGACCATGAAATGG 1791
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAGCA-G--GACAAGATCCACTCAAACCAGTTGGTTGGTGAACCAGGGACCATGAAATGG 1436
Query 1792 TGATCAACACTGTCTACAAAAAC 1814
||||||| |||||||||||||||
Sbjct 1437 TGATCAAGACTGTCTACAAAAAC 1459
> Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1
Length=1799
Score = 547 bits (296), Expect = 1e-154
Identities = 647/815 (79%), Gaps = 30/815 (4%)
Strand=Plus/Plus
Query 424 GGTTATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCTACATAT 483
|||||| |||| ||||||||||||||| ||||||| || |||||| || |||||| |||
Sbjct 264 GGTTATGTTCTAGAAGACGTTCCTCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTAT 323
Query 484 CCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAGCAGTATTTTGTCGATGAG 543
|| |||||||| ||||||||| |||| ||||| || || ||||| || ||||| ||||
Sbjct 324 CCTAATCCATTGCAAGACAATCCAGCATACTCAGTGGTGAAGCAATACTTTGTTGATGCT 383
Query 544 GATGACACG-GTTCCTCAAAAAATAGTAGTTCATC-CTGATAGTCCTAGGGGAACGCATT 601
||||| | | ||||||||||| || || ||||| | ||| |||| ||||| | ||||
Sbjct 384 GATGATA-GTGTTCCTCAAAAGATCGTTGTTCA-CAAGGATGGTCCAAGGGGGATTCATT 441
Query 602 TCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTCTTGCTTGCA 661
| | || ||||| |||||||||| ||| ||||| || || ||||| | | ||||||||
Sbjct 442 TTAGACGAGCAGGGCCACGTCAAAAGGTATACTTCGAATCTGATGAAGGGCATGCTTGCA 501
Query 662 TTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGATAGTTTGTG 721
| ||||| ||||| ||||| ||||| || |||||||| ||||| ||||| |||| || |
Sbjct 502 TAGTTACCTGTGGAGGTCTTTGTCCTGGCCTTAATACCGTGATTAGAGAAATAG--TGAG 559
Query 722 GA-T-TATCTTATATGTATGGTGTCAAGAGAATCCTTGGCATTGATGGAGGTTACAGAGG 779
| | |||||||||||||||| || |||||||| || || || ||||| || || |||||
Sbjct 560 CAGTCTATCTTATATGTATGGAGTGAAGAGAATACTGGGAATAGATGGTGGATATAGAGG 619
Query 780 ATTTTACGC-GAGAAACACAATC-CATTTGGACT-TAAAAACAGTGAATGATATCCATAG 836
||||| || || || || || | ||||||| |||| | || ||||||||||||
Sbjct 620 CTTTTATGCTAAG-AATACTGTCTC-CTTGGACTCTAAAGTC-GTAAATGATATCCAT-- 674
Query 837 AAGC--GGAGGAACTATCCTCGGGACTTCAAGAGGCGGTCACAACACCACCAAGATAGTA 894
|||| ||||| |||||||||||||| || |||| |||||| | ||||| ||||||||
Sbjct 675 AAGCGTGGAGGGACTATCCTCGGGACCTCGCGAGGTGGTCACGATACCACAAAGATAGTT 734
Query 895 GATAGTATTCAAGATCGCGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCACAG 954
|| || ||||||||||| || || || |||||||| || || || ||||||||| | |||
Sbjct 735 GACAGCATTCAAGATCGAGGAATCAATCAGGTTTACATTATAGGAGGAGATGGAACTCAG 794
Query 955 AAAGGAGCAGCTGCTATATTCGAGGAGATTAGGA-AACGCAAG-CTTAAAGTTGCGGTTG 1012
||||||| ||| |||||| ||||| |||| || ||| | || |||||||| ||||
Sbjct 795 CGAGGAGCATCTGTTATATTTGAGGAAATTA-GACGACG-TGGCCTGAAAGTTGCAGTTG 852
Query 1013 CCGGAATCCCGAAAACAATTGACAATGACATTCCTATTATCGATAGATCTTTCGGGTTTG 1072
||||||||||||||||| || |||||||| ||| | || || | |||||| |||||||
Sbjct 853 TTGGAATCCCGAAAACAATCGATAATGACATACCTGTGATAGACAAATCTTTTGGGTTTG 912
Query 1073 ACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCT-ACAAGC 1131
||||||||||||||||||||||||| ||||| || ||||||||||| ||||| | | |
Sbjct 913 ACACAGCTGTAGAAGAGGCTCAACGAGCTATTAACGCAGCACATGTGGAAGCGGAGA-G- 970
Query 1132 TTT-GAGAATGGTATTGGTC-TTGTGAAG-TTAATGGGACGGTACAGCGGATTCATTGCA 1188
| | ||||| |||||||| | |||| ||| ||| |||| || |||||||| ||||| ||
Sbjct 971 TATAGAGAACGGTATTGG-CGTTGTCAAGCTTA-TGGGCCGCTACAGCGGTTTCATAGCG 1028
Query 1189 ATGCATGCCACTCTAGCCAGCCGAGATGTGGACTG 1223
||| | || |||||||| ||| |||||||||||||
Sbjct 1029 ATGTACGCGACTCTAGCAAGCAGAGATGTGGACTG 1063
> Ahg491836 jgi|Araly1|491836|fgenesh2_kg.7__1269__AT4G29210.1
Length=2122
Score = 185 bits (100), Expect = 9e-46
Identities = 150/173 (87%), Gaps = 8/173 (5%)
Strand=Plus/Minus
Query 1900 ATAATATTCTTCAAGCAAagagaagagagagagaTAACT-CTTGTGAG---AATAATGTA 1955
||| ||||| |||||| || || ||| |||||||||||| |||||||| |||||||||
Sbjct 2122 ATAGTATTCATCAAGC-AA-AG-AGA-AGAGAGATAACTCCTTGTGAGAATAATAATGTA 2067
Query 1956 ACAACTCTTGGTTCCAACTACAACTTTGCTTCTGTATATATCCCACGCTGAGTCTTTGAG 2015
| |||||||| ||||||||||||||||||||||||||||||||||| || | ||||| |
Sbjct 2066 ATAACTCTTGTTTCCAACTACAACTTTGCTTCTGTATATATCCCACACTCAATCTTTCAA 2007
Query 2016 GCTCATGTAACTTTATTCAAATTTACATGATAGAGAATGGGACTTGAATGAGG 2068
|||||| |||||||| |||| ||||||||||| | |||||||||||||| |||
Sbjct 2006 GCTCATATAACTTTAATCAACTTTACATGATATAAAATGGGACTTGAATAAGG 1954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77780280290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5