BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29230.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328786 jgi|Araly1|328786|fgenesh1_pm.C_scaffold_7001013 2551 0.0
> Ahg328786 jgi|Araly1|328786|fgenesh1_pm.C_scaffold_7001013
Length=1494
Score = 2551 bits (1381), Expect = 0.0
Identities = 1459/1497 (97%), Gaps = 3/1497 (0%)
Strand=Plus/Plus
Query 1 ATGAACAAGAGTAATCCTGCTGGTTCGGTGACTGGTTCGGATATAATAGACGCCAAGATC 60
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGAACAAGAGTAATCCTGCTGGCTCGGTGACTGGTTCGGATATAATCGACGCAAAGATC 60
Query 61 GAAGAACATCAACTTTGTGGATCCAAGAAGTGTCCTAGCTGCGGCCACAAGCTCGAAGGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGAACATCAACTTTGTGGATCCAAGAAGTGTCCTAGCTGCGGCCACAAGCTCGAAGGC 120
Query 121 AAACCACAGGATTGGGTTGGTTTACCAGCAGGAGTGAAATTTGACCCAACGGATCAAGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACCACAGGATTGGGTTGGTTTACCAGCAGGAGTGAAATTTGACCCAACGGATCAAGAA 180
Query 181 TTGATAGAACATTTAGAAGCGAAAGTGTTAGCTAAAGACTTCAAATCTCACCCTCTCATT 240
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 TTGATAGAACATTTAGAAGCGAAAGTCTTAGCTAAAGACTTTAAATCTCACCCTCTCATT 240
Query 241 GACGAATTCATCCCAACCATTGAAGGCGAAGACGGCATTTGCTACACTCATCCCGAGAAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GACGAATTCATCCCAACCATTGAAGGCGAAGACGGCATTTGCTACACTCACCCCGAGAAA 300
Query 301 CTTCCTGGAGTGACTAGAGATGGTTTAAGCCGACACTTCTTTCATAGACCATCAAAGGCG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CTTCCTGGAGTGACTAGAGATGGTTTAAGCCGGCACTTCTTTCATAGACCATCAAAGGCG 360
Query 361 TACACGACGGGAACAAGAAAGCGAAGAAAGATTCAAACAGAATGTGACAATAATTTGCAA 420
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 361 TACACGACGGGAACAAGAAAGCGAAGAAAGATACAAACGGAATGTGACAATAATCTGCAA 420
Query 421 GGAAGTAGTAGCTCCGGTGAGACGAGGTGGCATAAGACCGGTAAGACAAGACCGGTTATG 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAAGTAGAAGCTCCGGTGAGACGAGGTGGCATAAGACCGGTAAGACAAGACCGGTTATG 480
Query 481 GTAAACGGTAAGCAAAAAGGTTGTAAGAAGATTTTGGTTTTGTATACCAATTTTGGTAAG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GTAAACGGTAAGCAAAAAGGTTGTAAGAAGATTTTGGTTTTGTATACCAATTTTGGAAAG 540
Query 541 AATCGAAAACCGGAGAAAACCAATTGGGTAATGCATCAATATCATTTGGGGACACATGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATCGAAAACCGGAGAAAACCAATTGGGTAATGCATCAATATCATTTGGGGACACATGAG 600
Query 601 GAAGAGAAAGAAGGAGAACTTGTTGTGTCTAAGATCTTTTATCAAACTCAGCCTAGGCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGAGAAAGAAGGAGAACTTGTTGTGTCTAAGATCTTTTATCAAACTCAGCCTAGGCAA 660
Query 661 TGCAACTGGTCGTCTTCTACATCGAGCTTGAACGCTATAGGTGGTGGCGGCGGTGAAGCG 720
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 661 TGCAACTGGTCGTCTTCTACATCGAGCTTGAACGCTTTAGGTGGTGGAGGCGGTGAAGCG 720
Query 721 AGTAGCGGCGGAGGCGGCGGAGAGTATCATATGAGGAGAGATAGTGGGACTACTAGTGGT 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTAGCGGCGGAGGCGGTGGAGAGTATCATATGAGGAGAGATAGTGGGACTACTAGTGGT 780
Query 781 GGGAGTTGTTCTTCGTCTAGAGAAATTATTAATGTTAATCCTCCGAATCGATCCGATGAA 840
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 781 GGGAGTTGTTCTTCGTCTAGAGAGATTATTAATGTTAATCCTCCAAATCGGTCCGATGAA 840
Query 841 ATAGGCGGCGTTGGTGGTGGCGTTATGGCCGTAGCAGCTGCGGCTGCGGCGGTTGCAGCT 900
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 841 ATAGGCGGTGTTGGTGGTGGCGTTATGGCCGTAGCAGCTGCCGCTGCGGCGGTTGCGGCT 900
Query 901 GGGCTTCCGAGTTATGCAATGGATCAGCTCAGCTTTGTTCCGTTTATGAAAAGCTTTGAT 960
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 GGGCTTCCGAGTTATGCAATGGATCAACTCAGCTTTGTTCCGTTTATGAAAAGCTTTGAT 960
Query 961 GAGGTGGCGAGGAGGGAAACTCCTCAGACTGGGCACGCTACATGTGAGGATGTAATGGCA 1020
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 GAGGTGGCGAGGAGGGAAACTCCTCAGACCGGGCACGCTACATGTGAGGATGTAATGGCA 1020
Query 1021 Gaacaacatcgtcatcgtcatcaaccatcatcatcaacatcacatcatatggctcatgat 1080
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1021 GAACAACATCGTCATCGTCATCAAGCATCATCATCAGCATCACATCATATGGCTCATGAT 1080
Query 1081 catcaccatcatcatcatcaacaacaacaacaacggcatcatgcattcaacatAAGCCAG 1140
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CATCACCATCATCATCAT---CAACAACAACAACGGCATCATGCATTCAACATAAGCCAG 1137
Query 1141 CCTACACATCCGATATCAACCATTATTTCTCCATCTACTTCGCTTCACCATGCCTCCATT 1200
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CCAACACATCCAATATCAACCATTATTTCTCCATCTACTTCGCTTCACCATGCCTCCATT 1197
Query 1201 AATATTCTTGACGATAATCCTTATCATGTTCATAGAATCTTGCTCCCCAATGAAAATTAC 1260
||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1198 AATATCCTCGACGAGAATCCTTATCATGTTCATAGAATCATGCTCCCCAATGAAAATTAC 1257
Query 1261 CAGACACAACAGCAACTACGTCAAGAAGGAGAAGAAGAACATAATGATGGGAAGATGGGA 1320
|||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1258 CAGACACAACAGCAACAACGTCAAGATGGAGATGAAGAACATAATGATGGGAAGATGGGA 1317
Query 1321 GGAAGGTCAGCTTCCGGATTGGAAGAACTCATAATGGGCTGCACTTCTTCTACCACTCAT 1380
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGAAGGTCAGCTTCTGGATTGGAAGAACTCATAATGGGCTGCACTTCTTCTACCACTCAT 1377
Query 1381 CATGATGTAAAAGATGGGTCATCATCAATGGGGAACCAACAAGAAGCAGAATGGTTGAAG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CATGATGTAAAAGATGGGTCATCATCAATGGGGAACCAACAAGAAGCAGAATGGTTGAAG 1437
Query 1441 TACTCAACGTTTTGGCCAGCCCCTGACTCTTCTGACAACCAAGATCATCATGGGTAA 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TACTCAACGTTTTGGCCAGCCCCTGACTCTTCTGACAACCAAGATCATCATGGGTAA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5