BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29240.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945101 jgi|Araly1|945101|scaffold_701330.1 1925 0.0
Ahg480491 jgi|Araly1|480491|fgenesh2_kg.3__3192__AT2G19780.1 859 0.0
> Ahg945101 jgi|Araly1|945101|scaffold_701330.1
Length=1275
Score = 1925 bits (1042), Expect = 0.0
Identities = 1211/1290 (94%), Gaps = 22/1290 (2%)
Strand=Plus/Plus
Query 205 CTACTTTG-A--AGGA-AAAAATGTCTAAGAAGAAGAAAGGCAGCAACAACTTTAAGCTT 260
|||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 2 CTACTTTGAAGGAGGAGAAAAATGTCTAAGAAGAAGAAAGGCAG---CAACTTTAAGCTT 58
Query 261 CTCTGTTTCTTCCTGTTTTTGGGTGGTTTGGTTCAGACAGATGCTTCTTTTGGAGTAGGA 320
||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 59 CTCTGTTTCTTCCTGTTTTTGACTGGTTTGATTCAGATAGATGCTTCTTTTGGAGTAGGA 118
Query 321 GGCGGCGTTGGAGTAGGAATcggcggcggcggcggtggcggtggcggtggtgtttgggtt 380
|||||||||||||| | || |||||| ||||||||||| |||||||||||| ||
Sbjct 119 GGCGGCGTTGGAGT-TG-AT----ATCGGCGGTGGTGGCGGTGGTGGTGGTGTTTGGATT 172
Query 381 ggcggtggATACAACAACGGTGGAAATCGTAATGCTGTTCCAGGATCATCAGCTCCAAAC 440
||||| |||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 173 GGCGGCGGATACAACAACGGCGGTAACCGTAATGCTGTTCCAGG---ATCAGCTCCAAAC 229
Query 441 AGGGTAGCTTACAATGCTCTTCAAGTTTGGAAATCAGCCATGAGAGAGGATCCATCAAAT 500
|| |||||||||||||||||||||| ||||| ||||||||| | |||||||||||| |||
Sbjct 230 AGAGTAGCTTACAATGCTCTTCAAGCTTGGAGATCAGCCATTACAGAGGATCCATCTAAT 289
Query 501 GTTCTCAAAACATGGGTTGGATCAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGGT 560
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GTTCTTAAAACATGGGTTGGATCAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGGT 349
Query 561 CAATCTATAACCTCTATAGATCTTAACCATGCAAATCTCAAAGGCACACTTGTCAAAGAC 620
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 350 CAATCTATAACCTCCATAGATCTTAACCATGCAAATCTCAAAGGCTCACTTGTCAAAGAC 409
Query 621 CTAGCTTTACTCTCAGACCTCAATATTCTCCATCTCAACAGTAACAGATTCTCAGGGCAA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CTAGCTTTACTCTCAGACCTCAATATTCTCCATCTCAACAGTAACAGATTCTCAGGGCAA 469
Query 681 ATCCCAGATTCTTTCAAATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAATAAA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ATCCCAGATTCTTTCAAATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAATAAA 529
Query 741 CTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGATCTC 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGATCTC 589
Query 801 CGGTTTAATAGTTTAACCGGTTTCATCCCTGAAGAGCTTTTCAACAAACGGTTAGACGCG 860
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CGGTTTAATAGTTTCTCCGGTTTCATCCCTGAAGAGCTTTTCAACAAACGGTTAGACGCA 649
Query 861 ATTCTCCTCAATAACAATCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTCTCCG 920
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ATTCTCCTCAATAACAACCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTCTCCG 709
Query 921 GCTTCGGTTATTAATCTCGCGAATAACAGATTTTCCGGCGAAATTCCGACGAGTTTTGGT 980
||||| || |||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 710 GCTTCTGTGATTAATCTGGCAAATAACAAATTTTCCGGCGAAATTCCGACGAGTTTTGGC 769
Query 981 CTGACGGGATCGAGGGTTAAGGAAGTTTTGCTTTTGAATAACCAGTTAACCGGTTGTATA 1040
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CTCACGGGATCGAGGGTTAAGGAAGTTTTGCTTTTGAATAACCAGTTAACCGGTTGTATA 829
Query 1041 CCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTACAATGCATTG 1100
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 830 CCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTTCAATTCACTG 889
Query 1101 ATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAATCTTGCT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAATCTTGCT 949
Query 1161 CACAATAAATTCTCTGGGGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAATCTT-ATTAA 1219
||||| |||||||| || ||||||||||||||||||||||||||||||||| || |||||
Sbjct 950 CACAACAAATTCTCCGGAGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAAT-TTGATTAA 1008
Query 1220 TCTCACTGTTGCGTTCAATTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGGGTTAG 1279
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1009 TCTCACTGTTGCTTTCAACTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGGATTAT 1068
Query 1280 TTTCGGGTTTGATTTCGTTGGGAATTGTATTCCCGGGAGGAATTCGCAGCGGCCGCAGCC 1339
||||||||| |||||||| || || |||||||| |||||||||| |||||||||||||||
Sbjct 1069 TTTCGGGTTCGATTTCGTCGGAAACTGTATTCCGGGGAGGAATTTGCAGCGGCCGCAGCC 1128
Query 1340 GGATTGTTCCGGTTATTCCGGCGGAGCTATGAGCTGTTTTAGGATTCCGACGCAGCCTTT 1399
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1129 GGATTGTTCGGGTTACTCCGGCGGAGCGATGAGCTGTTTTAGGATTCCGACGCAGCCTTT 1188
Query 1400 GGCTTGTGCTGCGATAAGTGTTGGATTGAGAGAGAGTAATAATCAATACTACACTTCATC 1459
|||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |
Sbjct 1189 GGCTTGTGCTGCGATAAGTGTTGGATTGAGAGAGGGTAACAATCAGTACTACACTTC-T- 1246
Query 1460 TCCTCCATGAAAGTTTCT-AAAGTTAGAAG 1488
|| ||||||||||||| | |||||||||||
Sbjct 1247 TC-TCCATGAAAGTTTTTTAAAGTTAGAAG 1275
> Ahg480491 jgi|Araly1|480491|fgenesh2_kg.3__3192__AT2G19780.1
Length=1846
Score = 859 bits (465), Expect = 0.0
Identities = 826/998 (83%), Gaps = 33/998 (3%)
Strand=Plus/Plus
Query 446 AGCTTACAATGCTCTTCAAGT-TTGGAAATCAGCCATGAGAGAGGATCCATCAAATGTTC 504
||||||||||||||||||| | ||||||||| ||||| | ||| |||||||| |||||
Sbjct 717 AGCTTACAATGCTCTTCAA-TCTTGGAAATCTGCCATTACAGAAGATCCATCTGGTGTTC 775
Query 505 TCAAAACATGGGTTGGAT-CAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGG-TCA 562
| || ||||||||||| | ||||||||||||||||| ||| |||||||||||||| ||
Sbjct 776 TTAAGACATGGGTTGG-TGAAGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGTTC- 833
Query 563 ATCT-ATAACCTCTATAGATCTTAACCATGCAAATCTCAAAGGCA-CACTTGTCAAAGAC 620
|| | |||||||| |||||||| ||| | |||||||||||||||| || |||| ||||||
Sbjct 834 AT-TGATAACCTCCATAGATCTAAACAAAGCAAATCTCAAAGGCACCA-TTGTTAAAGAC 891
Query 621 CTAGCTTTACTCTCAGACCTCAA-TATTCTCCATCTCAACAGTAACAGATTCTCAGGGCA 679
|| |||||||||||||||| || ||||| |||||||| || |||||||||| || ||
Sbjct 892 CTCTCTTTACTCTCAGACCT-AACCATTCTTCATCTCAATAGCAACAGATTCTTTGGTCA 950
Query 680 AATCCCAGATTCTTTC-A-AATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAAT 737
|||||||||||||||| | |||| || | ||||||||||||||| ||||| ||||||||
Sbjct 951 AATCCCAGATTCTTTCAAGAATC-TT-GATTCTCTTCAAGAACTCGATCTCAGCAACAAC 1008
Query 738 AAACTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGAT 797
| | |||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1009 AGATTCTCTGGTTCTTTCCCTCAAGTCACACTCTACATCCCAAATCTGGTTTACCTCGAT 1068
Query 798 CTCCGGTTTAATAGTTTAACCGGTTTC-ATCCCTGAAGAGCTTTTCAACAAACGGTTAGA 856
|||||||| || | ||| || || || || || ||| | || |||||||||| |||||
Sbjct 1069 CTCCGGTTCAACAATTTCACTGG-CTCTATACCGGAAAATCTCTTCAACAAACAATTAGA 1127
Query 857 CGCGATTCTCCTCAATAACAATCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTC 916
||||||||| ||||| |||||||||||| ||||||||| || | || ||||| | ||
Sbjct 1128 CGCGATTCTTCTCAACAACAATCAATTCACCGGAGAAATTCCTGGGAATCTCGGTTACTC 1187
Query 917 TCCGGCTTCGGTTATTAATCTCGCGAATAACAGATTTTCCGGCGAAATTCCGACGAGTTT 976
| | |||||||| ||||||||||| ||||| | ||| |||||||||||||||||||||||
Sbjct 1188 TACAGCTTCGGTGATTAATCTCGCTAATAATAAATTATCCGGCGAAATTCCGACGAGTTT 1247
Query 977 TGGTCTGACGGGATCGAGGGTT-AAGGAAGTTTTGCTT-TTGAATAACCAGTTAACCGGT 1034
|||| | || || |||| || || || |||||| || |||||||||||||||||||||
Sbjct 1248 TGGTATCACCGGTTCGA-AATTGAAAGAGGTTTTG-TTCTTGAATAACCAGTTAACCGGT 1305
Query 1035 TGTATACCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTACAAT 1094
|||||||||||||| || ||| | ||||| || ||||||||| | |||||||| | ||||
Sbjct 1306 TGTATACCGGAATCAGTCGGTTTATTCTCCGACATTGAAGTCCTCGACGTTAGTTTCAAT 1365
Query 1095 GCATTGATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAAT 1154
|||||||||||||||| || ||||||||||||||||| |||| ||||||| ||||||||
Sbjct 1366 TCATTGATGGGTCATGTCCCTGATACGATCTCTTGCTTATCGGAGATTGAAGTTTTGAAT 1425
Query 1155 CTTGCTCACAATAAATTCTCTGGGGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAATCTT 1214
|| | ||||| |||||||| || || |||| ||||||||||| | |||||||||||
Sbjct 1426 CTCGGGCACAACAAATTCTCCGGTGATCTTCCCGATTTGGTTTGCACTTTGAGGAATCTG 1485
Query 1215 ATTAATCTCACTGTTGCGTTCAATTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGG 1274
|| || || || ||||| ||||||||||||||||||||||||||||| || || | ||
Sbjct 1486 ATAAACCTGACGGTTGCTTTCAATTTCTTCTCTGGGTTTAGCTCTGAGTG--CT-CGAGT 1542
Query 1275 GTTAGT-TTCGGGTTTGATTTCGTTGGGAATTGTATTCCCGGGA-GGAATTCGCAGCGGC 1332
|||| || |||||||||||| || |||||||||||||| | || || || ||||
Sbjct 1543 CTTAGCGTT-GGGTTTGATTTCACCGGAAATTGTATTCCCGGTAAGGG-TTATCAACGGC 1600
Query 1333 CGCAGCCGGATTGTTCCGGTTATTCC-GGCGGAGCTAT-GAGCTGTTTTAGGATTCCGAC 1390
|||| ||||||||||| || ||||| ||||| | || ||||||| ||||||||||| |
Sbjct 1601 CGCAACCGGATTGTTC-GGCGATTCCCGGCGGT-CAATTGAGCTGTCTTAGGATTCCGGC 1658
Query 1391 GCAGCCTTTGGCTTGTGCTGCGATAAGTGTTGGATTGA 1428
|||||| || | ||||||||||| || || |||||||
Sbjct 1659 GCAGCCGTTAACGTGTGCTGCGATTAGCGTGGGATTGA 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5