BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29250.1
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491831 jgi|Araly1|491831|fgenesh2_kg.7__1264__AT4G29250.1 2187 0.0
> Ahg491831 jgi|Araly1|491831|fgenesh2_kg.7__1264__AT4G29250.1
Length=1506
Score = 2187 bits (1184), Expect = 0.0
Identities = 1405/1512 (93%), Gaps = 14/1512 (1%)
Strand=Plus/Plus
Query 1 AACCAAAGAATAATAC--AACGAAAA-ATGTTTGCTAAAGAGAAGACAATAATGGAGGAG 57
||||||||||||| || ||| |||| || ||||||||||||||||||| |||||||||
Sbjct 1 AACCAAAGAATAAAACAAAAC-AAAATTTGATTGCTAAAGAGAAGACAATGATGGAGGAG 59
Query 58 GACCGCGTGAGATTCATATGCAAAAGAACCGTGGTGAGCACTAGATCGATTGAACCAGGG 117
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 GACCGCGTGAGATTCATATGCAAAAGAACCGTGGTCAGCACTAGATCGATTGAACCAGGG 119
Query 118 CGATTATACCAGTTATCAGTATTGGACCACGTCATGGAACCAAACCACATTCGTCTAGTC 177
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGATTATACCGGTTTTCAGTATTGGACCACGTCATGGAACCAAACCACATTCGTCTAGTG 179
Query 178 TACTATTACCGGTGTTCCAAGACTAGAGAACCGGGAGAAATCACaaaaaaaTTAAGGGAG 237
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TACTATTACCGGTCTTTGAAGACTAGAGAACCGGGAGAAATCACAAAAAAATTAAGGGAG 239
Query 238 TCATTAGCATACACACTCAATTGTTATCCGATTGTAACCGGGAGACTGGTTAAAGAAGTT 297
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 240 TCATTAGCATACACACTCAATTGTTATCCGATTGTAACCGGGAGATTGGTTAGGGAAAAT 299
Query 298 GATGGTAT-GGAAGAGAATAAGGATTTAAGCCAACGATGGATGGTAAAGAGCAACGACGC 356
|||||| | ||||||| | ||||| |||||| ||| |||| ||| ||||||||||||||
Sbjct 300 GATGGT-TCGGAAGAGCAGGAGGATGTAAGCCGACGGTGGAAGGTGAAGAGCAACGACGC 358
Query 357 CGGCGTGAGGATGGTGGAGGCCAGAGCAACCGGGTCAGTT-AAGGAATGGCTTAGGAGTG 415
||| |||||||||||||||| |||||||||||||| ||| || ||||||||||||||||
Sbjct 359 TGGCATGAGGATGGTGGAGGCGAGAGCAACCGGGTCGGTTGAA-GAATGGCTTAGGAGTG 417
Query 416 TAAATAGAGAGGAAGAACTCAAGCTTGTTCATTGGGAAGACATGTATCATCTTCAATATT 475
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 418 TAAATAGAGAGGAAGAACTCAAGCTTGTTCATTGGGAAGGCATGTATCATCTTCATTATT 477
Query 476 ATTGGTCTACCTTCTGTGTTCAGGTAACTGAGTTTGAAAGTGGTGGGTTAGCTATTGGAT 535
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 478 ATTGGTCTACCTTTTGTGTTCAGGTGACTGAGTTTGAAAGTGGTGGGTTAGCTATTGGGT 537
Query 536 TGAGTTGTAGCCATCTCTTAGCCGATCCAGTTTGTGCAATGATGTTTATTCGAGCTTGGG 595
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 TAAGCTGTAGCCATCTCTTAGCGGATCCAGTTTGTGCAATGATGTTTATTCGAGCTTGGG 597
Query 596 CAGATTTAACTTTGTCTCGGTCCATGATGGCTCCACCACTATTCCACCCGTTGCCGCCTC 655
||||| ||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 598 CAGATCTAACTCTGTCTCGATCCATGATGGCTCCTCCACTATTCCACCCGCTGCCGCCTC 657
Query 656 GCCGGTTTTCCAACCA-AAGACTAATCTCTAACAACCAACTGCTTAGCCATTACATCAAA 714
|||||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 GCCGGTTTGCCAACCATAA-ACTAATCTCTAACAACCAACTGCTTAGTCATTACATCAAA 716
Query 715 TCTTGCTCTCTAACGGCTTCACCGTCAAACATGACCGAGGACCATATGGTCACCGTTACT 774
|||||| |||||||||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 717 TCTTGCACTCTAACGGCTTCACCATCAAACGTGACCGAGGACCATATGGTCACTGTTACT 776
Query 775 TTTCTGTTCCCGGATCCGCTGGTCAGAGCCGGCGAGAATGAGCCAAGGATTTCGACATTT 834
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTTCTATTCCCGGATCCCCTGGTCAGAGCCGGCGAGAATGAGCCAAGGATTTCGACATTT 836
Query 835 GAGATTTTGGCTGGACTCTTTTGGGTCTGTGTGAGTCGAGCCAAAGGAAAAAGAAACGAG 894
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 GAGATTTTGGCTGGACTCTTTTGGGTCTGTGTGAGTCGAGCCAAAGGAAAGAGAAACGAG 896
Query 895 CTCATGGACATGTCCTTGTGCTTAGACGTTAGGAAATTGTTGCGTTTAGACCAAAGTTAT 954
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 897 CTCATGGACATGTCCTTGTGCTTAGACGTTAGGAAATTATTGCGTTTAGACCAAGGTTAT 956
Query 955 TTTGGTAATTGCATGGTTTATCACAAGGTTCCCTACTCCAAACCGGTTAAAACCAAAGAT 1014
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 957 TTTGGCAATTGCATGGTTTATCACAAGGTTCCCTATTCCAAACCAGTTAAAACCAAAGAT 1016
Query 1015 AAACTCTTATTCCACGCTGTTCAAGAGATTGAGAGCATAACCAAGAGACTAGACTACGAC 1074
||| | ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1017 AAATTGTTATTTCACGCTGTTCAAGAGATTGAGAACATAACCAAGAAACTAGACTACGAC 1076
Query 1075 ACGGTCATGGACTTGATTGAGTGGTTGAGTAGCAATAACGGTGCGATATCAAATGGTTCG 1134
||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||| ||
Sbjct 1077 ACGGTCATGGACTTGATCGAATGGCTGAGTAGCAATAACGGTGCGATATCTAATGGCTCT 1136
Query 1135 GATCTCGTGTGTACTAATTTAGAAAACATGTCTCATTCACGTCCGATGATGTTCGAGGAG 1194
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1137 GATCTCGTGTGTACTAATTTAGAGAACATGTCTCATTCACGTCCGATGATGTTCGAGGAG 1196
Query 1195 GATTTGGCTCTGAGCCACGTATCTTGCTATGTAGAAGGGCCTGTAGCTGGAGGTGGACAG 1254
||||||| |||||||||| | ||||||| |||| ||||||||||||||||||||||||||
Sbjct 1197 GATTTGGTTCTGAGCCACTTGTCTTGCTGTGTAAAAGGGCCTGTAGCTGGAGGTGGACAG 1256
Query 1255 GTCATAGTGCTTCCCTCACCGCCCGGTAAGGAACCAATGAGCCGAGTGGTTATGGTCAGT 1314
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1257 GTCATAGTGCTTCCCTCACTGCCCGGTAAGGGACCAATGAGCCGAGTGGTTATGGTCAGT 1316
Query 1315 CTTCCTCAAAGAGTGATGGTTAAGGTTA-TAGAAGACGAGCTTCTTTTAAGCTTTTCTCC 1373
||||||||||||| |||||||||||| | ||||||| ||||||||| |||||||||||||
Sbjct 1317 CTTCCTCAAAGAGAGATGGTTAAGGT-AGTAGAAGATGAGCTTCTTCTAAGCTTTTCTCC 1375
Query 1374 GGTCGTAATTATGGAAGATACA-AAGCAATTATAATTATACTTTATATGAAAGTATTAGT 1432
||| ||| |||||||| |||| || ||| ||||||| ||| ||||||||||||||||||
Sbjct 1376 GGTTGTAGTTATGGAAAATACCGAA-CAAATATAATTTTACATTATATGAAAGTATTAGT 1434
Query 1433 TAATGTTTATACTAAAGATCAATGTAATATAGGAGCAAAGGTAATATTAACGTCTAAAAC 1492
|| ||||||||||||| || |||||||| |||||||||| | ||||||| |||||||||
Sbjct 1435 TATTGTTTATACTAAAAATAAATGTAATCTAGGAGCAAACATGATATTAATGTCTAAAAC 1494
Query 1493 ACATAAGTGGTT 1504
|||||||| |||
Sbjct 1495 ACATAAGTTGTT 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5