BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29250.1 Length=1511 Score E Sequences producing significant alignments: (Bits) Value Ahg491831 jgi|Araly1|491831|fgenesh2_kg.7__1264__AT4G29250.1 2187 0.0 > Ahg491831 jgi|Araly1|491831|fgenesh2_kg.7__1264__AT4G29250.1 Length=1506 Score = 2187 bits (1184), Expect = 0.0 Identities = 1405/1512 (93%), Gaps = 14/1512 (1%) Strand=Plus/Plus Query 1 AACCAAAGAATAATAC--AACGAAAA-ATGTTTGCTAAAGAGAAGACAATAATGGAGGAG 57 ||||||||||||| || ||| |||| || ||||||||||||||||||| ||||||||| Sbjct 1 AACCAAAGAATAAAACAAAAC-AAAATTTGATTGCTAAAGAGAAGACAATGATGGAGGAG 59 Query 58 GACCGCGTGAGATTCATATGCAAAAGAACCGTGGTGAGCACTAGATCGATTGAACCAGGG 117 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 60 GACCGCGTGAGATTCATATGCAAAAGAACCGTGGTCAGCACTAGATCGATTGAACCAGGG 119 Query 118 CGATTATACCAGTTATCAGTATTGGACCACGTCATGGAACCAAACCACATTCGTCTAGTC 177 |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CGATTATACCGGTTTTCAGTATTGGACCACGTCATGGAACCAAACCACATTCGTCTAGTG 179 Query 178 TACTATTACCGGTGTTCCAAGACTAGAGAACCGGGAGAAATCACaaaaaaaTTAAGGGAG 237 ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TACTATTACCGGTCTTTGAAGACTAGAGAACCGGGAGAAATCACAAAAAAATTAAGGGAG 239 Query 238 TCATTAGCATACACACTCAATTGTTATCCGATTGTAACCGGGAGACTGGTTAAAGAAGTT 297 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | Sbjct 240 TCATTAGCATACACACTCAATTGTTATCCGATTGTAACCGGGAGATTGGTTAGGGAAAAT 299 Query 298 GATGGTAT-GGAAGAGAATAAGGATTTAAGCCAACGATGGATGGTAAAGAGCAACGACGC 356 |||||| | ||||||| | ||||| |||||| ||| |||| ||| |||||||||||||| Sbjct 300 GATGGT-TCGGAAGAGCAGGAGGATGTAAGCCGACGGTGGAAGGTGAAGAGCAACGACGC 358 Query 357 CGGCGTGAGGATGGTGGAGGCCAGAGCAACCGGGTCAGTT-AAGGAATGGCTTAGGAGTG 415 ||| |||||||||||||||| |||||||||||||| ||| || |||||||||||||||| Sbjct 359 TGGCATGAGGATGGTGGAGGCGAGAGCAACCGGGTCGGTTGAA-GAATGGCTTAGGAGTG 417 Query 416 TAAATAGAGAGGAAGAACTCAAGCTTGTTCATTGGGAAGACATGTATCATCTTCAATATT 475 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 418 TAAATAGAGAGGAAGAACTCAAGCTTGTTCATTGGGAAGGCATGTATCATCTTCATTATT 477 Query 476 ATTGGTCTACCTTCTGTGTTCAGGTAACTGAGTTTGAAAGTGGTGGGTTAGCTATTGGAT 535 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 478 ATTGGTCTACCTTTTGTGTTCAGGTGACTGAGTTTGAAAGTGGTGGGTTAGCTATTGGGT 537 Query 536 TGAGTTGTAGCCATCTCTTAGCCGATCCAGTTTGTGCAATGATGTTTATTCGAGCTTGGG 595 | || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 538 TAAGCTGTAGCCATCTCTTAGCGGATCCAGTTTGTGCAATGATGTTTATTCGAGCTTGGG 597 Query 596 CAGATTTAACTTTGTCTCGGTCCATGATGGCTCCACCACTATTCCACCCGTTGCCGCCTC 655 ||||| ||||| ||||||| |||||||||||||| ||||||||||||||| ||||||||| Sbjct 598 CAGATCTAACTCTGTCTCGATCCATGATGGCTCCTCCACTATTCCACCCGCTGCCGCCTC 657 Query 656 GCCGGTTTTCCAACCA-AAGACTAATCTCTAACAACCAACTGCTTAGCCATTACATCAAA 714 |||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||| Sbjct 658 GCCGGTTTGCCAACCATAA-ACTAATCTCTAACAACCAACTGCTTAGTCATTACATCAAA 716 Query 715 TCTTGCTCTCTAACGGCTTCACCGTCAAACATGACCGAGGACCATATGGTCACCGTTACT 774 |||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||| Sbjct 717 TCTTGCACTCTAACGGCTTCACCATCAAACGTGACCGAGGACCATATGGTCACTGTTACT 776 Query 775 TTTCTGTTCCCGGATCCGCTGGTCAGAGCCGGCGAGAATGAGCCAAGGATTTCGACATTT 834 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TTTCTATTCCCGGATCCCCTGGTCAGAGCCGGCGAGAATGAGCCAAGGATTTCGACATTT 836 Query 835 GAGATTTTGGCTGGACTCTTTTGGGTCTGTGTGAGTCGAGCCAAAGGAAAAAGAAACGAG 894 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 837 GAGATTTTGGCTGGACTCTTTTGGGTCTGTGTGAGTCGAGCCAAAGGAAAGAGAAACGAG 896 Query 895 CTCATGGACATGTCCTTGTGCTTAGACGTTAGGAAATTGTTGCGTTTAGACCAAAGTTAT 954 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 897 CTCATGGACATGTCCTTGTGCTTAGACGTTAGGAAATTATTGCGTTTAGACCAAGGTTAT 956 Query 955 TTTGGTAATTGCATGGTTTATCACAAGGTTCCCTACTCCAAACCGGTTAAAACCAAAGAT 1014 ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 957 TTTGGCAATTGCATGGTTTATCACAAGGTTCCCTATTCCAAACCAGTTAAAACCAAAGAT 1016 Query 1015 AAACTCTTATTCCACGCTGTTCAAGAGATTGAGAGCATAACCAAGAGACTAGACTACGAC 1074 ||| | ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1017 AAATTGTTATTTCACGCTGTTCAAGAGATTGAGAACATAACCAAGAAACTAGACTACGAC 1076 Query 1075 ACGGTCATGGACTTGATTGAGTGGTTGAGTAGCAATAACGGTGCGATATCAAATGGTTCG 1134 ||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||| || Sbjct 1077 ACGGTCATGGACTTGATCGAATGGCTGAGTAGCAATAACGGTGCGATATCTAATGGCTCT 1136 Query 1135 GATCTCGTGTGTACTAATTTAGAAAACATGTCTCATTCACGTCCGATGATGTTCGAGGAG 1194 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1137 GATCTCGTGTGTACTAATTTAGAGAACATGTCTCATTCACGTCCGATGATGTTCGAGGAG 1196 Query 1195 GATTTGGCTCTGAGCCACGTATCTTGCTATGTAGAAGGGCCTGTAGCTGGAGGTGGACAG 1254 ||||||| |||||||||| | ||||||| |||| |||||||||||||||||||||||||| Sbjct 1197 GATTTGGTTCTGAGCCACTTGTCTTGCTGTGTAAAAGGGCCTGTAGCTGGAGGTGGACAG 1256 Query 1255 GTCATAGTGCTTCCCTCACCGCCCGGTAAGGAACCAATGAGCCGAGTGGTTATGGTCAGT 1314 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1257 GTCATAGTGCTTCCCTCACTGCCCGGTAAGGGACCAATGAGCCGAGTGGTTATGGTCAGT 1316 Query 1315 CTTCCTCAAAGAGTGATGGTTAAGGTTA-TAGAAGACGAGCTTCTTTTAAGCTTTTCTCC 1373 ||||||||||||| |||||||||||| | ||||||| ||||||||| ||||||||||||| Sbjct 1317 CTTCCTCAAAGAGAGATGGTTAAGGT-AGTAGAAGATGAGCTTCTTCTAAGCTTTTCTCC 1375 Query 1374 GGTCGTAATTATGGAAGATACA-AAGCAATTATAATTATACTTTATATGAAAGTATTAGT 1432 ||| ||| |||||||| |||| || ||| ||||||| ||| |||||||||||||||||| Sbjct 1376 GGTTGTAGTTATGGAAAATACCGAA-CAAATATAATTTTACATTATATGAAAGTATTAGT 1434 Query 1433 TAATGTTTATACTAAAGATCAATGTAATATAGGAGCAAAGGTAATATTAACGTCTAAAAC 1492 || ||||||||||||| || |||||||| |||||||||| | ||||||| ||||||||| Sbjct 1435 TATTGTTTATACTAAAAATAAATGTAATCTAGGAGCAAACATGATATTAATGTCTAAAAC 1494 Query 1493 ACATAAGTGGTT 1504 |||||||| ||| Sbjct 1495 ACATAAGTTGTT 1506 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56564013825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5