BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29260.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491830 jgi|Araly1|491830|fgenesh2_kg.7__1263__AT4G29260.1 1260 0.0
Ahg889208 jgi|Araly1|889208|Al_scaffold_0007_1194 449 2e-125
Ahg889207 jgi|Araly1|889207|Al_scaffold_0007_1193 405 3e-112
> Ahg491830 jgi|Araly1|491830|fgenesh2_kg.7__1263__AT4G29260.1
Length=918
Score = 1260 bits (682), Expect = 0.0
Identities = 790/840 (94%), Gaps = 16/840 (2%)
Strand=Plus/Plus
Query 133 TTGCGAAACGATAACCAAT--AATAAATGGGAGAC--ATCATTATCTCTTTTTCTAAATC 188
||| |||||||||||| || ||| |||||||||| |||||||||||||| ||||||||
Sbjct 89 TTG-GAAACGATAACC-ATCCAATGAATGGGAGACAGATCATTATCTCTTTCTCTAAATC 146
Query 189 TCTCCAATGGCGTCTCTTCGTAGCCTTTCGATTTGGttcttcttcttcttcgtcttcgtc 248
|||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||
Sbjct 147 TCTCCAATGGCGTCTCTTCGCAGCCTTTCGATTTGG---TTCTTCTTC-T--TCTTCGTC 200
Query 249 ttcttAATCAATCCCTCCATTTCTATTCGAACTTCCTTCATCAAGCTTCCCGGAAGCGAC 308
||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 201 TTCTTAATCAATCCCTCCATTTCTATTCGCACTTCCTTCATCAAGCTCCCCACAAGCGAC 260
Query 309 GGATCTCGCTACTGCGACAGCTGGAGATTAGCCGCCGAGACCAATAACGTCGGAACTTGG 368
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 261 GGATCTCGCTACTGCGACAGCTGGAGATTAGCCGCCGAGACCAACAACGCCGGAACCTGG 320
Query 369 GATCTGATTCCGTCAATCTGCGTGGATTCCGTCGCCGAGTATCTTAACGGAGACCAGTTT 428
||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 321 GATGTGATTCCGTCAATTTGCGTGGATTCCGTCGCCGAGTATCTTAACGGATACCAGTTC 380
Query 429 TTATCCGATTACAG-TGTCATCGTCGATTATGCTCTCGCGTTTGCGAAATCGGTTGAAAT 487
||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 381 CGATCAGATTAC-GATGTCATCGTCGATTATGCGCTCGCGTTTGCGAAATCGGTTGAAAT 439
Query 488 TTCCGGCGACGGCAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATAT 547
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CTCCGGCGACGGTAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATAT 499
Query 548 TGACTACTACAAGGCTCATGGTTACGGGTCTGAACCGTATGACGATAATAAATTTAGTGA 607
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 500 TGACTACTACAAGGCTCATGGTTACGGGTCTGAACCGTATGACGATAATAGTTTTAGTGA 559
Query 608 GTGGGTGGAACAAGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GTGGGTGGAACAAGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCT 619
Query 668 CAAGAAACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACGAGCATCAAAGGACTTC 727
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 620 AAAGAAACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACGAGGATCAAAGGAGTTC 679
Query 728 CACCGAGACAAATCTCCGGGATGCCGGTTATTCCGGTTGGGAACGTCTCCTCTTGAGAGG 787
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CACCGAGACAAATCTCCGCGATGCCGGTTATTCCGGTTGGGAACGTCTCCTCTTGAGAGG 739
Query 788 TCCAAATGATCAAGGGAAGTCAGCTACAAATTACAAATCCGAGCAGCGATCGAAACTGAT 847
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 740 TCCAAATGATCAAGGGAAATCAGCTACAAATTACAAATCTGAGCAGCGATCGAAACTAAT 799
Query 848 TGAGGAAGGTTTCAAAATCCGTGGCAATAGCGGTGATCAATGGAGTGA-CTTGCAAGGTT 906
|||||||||||||||||||||||||||| ||||||||||||||| || ||| | |||||
Sbjct 800 TGAGGAAGGTTTCAAAATCCGTGGCAATTCCGGTGATCAATGGAGCGATCTT-CTAGGTT 858
Query 907 TTGCCGTGGCTGATCGTTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGATCAC 966
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TTGCCGTGGCTGATCGGTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGATCAC 918
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 87 ATTCTGCTAACTAATTAACTAATTAAAGTTTTTGG 121
||||| |||||||||||||||||||||||||||||
Sbjct 58 ATTCTACTAACTAATTAACTAATTAAAGTTTTTGG 92
> Ahg889208 jgi|Araly1|889208|Al_scaffold_0007_1194
Length=771
Score = 449 bits (243), Expect = 2e-125
Identities = 399/474 (84%), Gaps = 12/474 (3%)
Strand=Plus/Plus
Query 495 GACGGCAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATATTGACTAC 554
||||||||||||| |||| |||| || ||||| |||||||||||| | |||||||| |||
Sbjct 304 GACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGAGTAC 363
Query 555 TACAAGGCTCATGGTTACGGGTCTGAACCGTATGACGATAATAAATTTAGTGAGTGGGTG 614
|||||||||||||||||||||||| |||| ||||| ||| | ||| | ||||||||||
Sbjct 364 TACAAGGCTCATGGTTACGGGTCTCAACCTTATGATAATACTCTATTCAATGAGTGGGTG 423
Query 615 G-AACAAGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCTCAAGAA 673
| || |||||||||| |||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 424 GTAA-AAGGAACAGCCCCAGGGTTTGATGCGAGCTTGAGACTCTACAATGCCCTCAAGAA 482
Query 674 ACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACGAGCA-TCAAAGGACT-TCCACC 731
||||||||||||||||||||| |||||||| || || || | ||| || | | | |||
Sbjct 483 ACTTGGTTTCACTATCATTTTACTAACCGGCCGAGATGA-AAGTCAGAGAAGTAT-AACC 540
Query 732 GAGACAAATCTCCGGGATGCCGGTTATTCCGGTTGGGAA-CGTCTCCTCTTGAGAGGTCC 790
|||| |||||| ||||| |||||||||| ||||| |||| || ||||||||||| |||
Sbjct 541 GAGAAAAATCTTCGGGACGCCGGTTATTTCGGTT-GGAACCGACTCCTCTTGAGGGGTAA 599
Query 791 AAATGATCAAGG-GAAGTCAGCTACAAAT-TACAAATCCGAGCAGCGATCGAAACTGATT 848
|||||||||||| |||| ||| || | | |||||||| ||||| |||| ||| || ||
Sbjct 600 AAATGATCAAGGAAAAGT-AGCAAC-ATTGTACAAATCAGAGCAAAGATCAAAAGTGGTT 657
Query 849 GAGGAAGGTTTCAAAATCCGTGGCAATAGCGGTGATCAATGGAGTGACTTGCAAGGTTTT 908
| ||||| | || ||||| ||| |||| ||| |||||||||||||||||||||||||||
Sbjct 658 AAAGAAGGCTACACAATCCATGGAAATACCGGCGATCAATGGAGTGACTTGCAAGGTTTT 717
Query 909 GCCGTGGCTGATCGTTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGA 962
|||||||| | |||||| |||||||| || |||||||||||||| |||||||||
Sbjct 718 GCCGTGGCAGCTCGTTCCTTCAAAGTTCCTAATCCCATGTACTATATTCCTTGA 771
> Ahg889207 jgi|Araly1|889207|Al_scaffold_0007_1193
Length=786
Score = 405 bits (219), Expect = 3e-112
Identities = 391/472 (83%), Gaps = 20/472 (4%)
Strand=Plus/Plus
Query 501 AAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATATTGACTACTACAAG 560
||||||| |||| |||| || ||||| |||||||||||| ||||| |||| |||||||||
Sbjct 325 AAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCGAATCTTGAGTACTACAAG 384
Query 561 GCTCATGGTTACGGGTCTGAACCGTATGACGATAATAAATTTAGTGAGTGGGTGG-AACA 619
|||||||||||||||||| ||||||| ||| ||| | || | ||||||||||| || |
Sbjct 385 GCTCATGGTTACGGGTCTCAACCGTACGACAATACTTTGTTCAATGAGTGGGTGGTAA-A 443
Query 620 AGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCTCAAGAAACTTGG 679
||||| ||| |||| |||||||||||||||||| || | ||| |||||||||||||||||
Sbjct 444 AGGAAAAGCCCCAGGTTTTGATGCGAGCTTGAGGCTCTTCAAAGCTCTCAAGAAACTTGG 503
Query 680 TTTCACTATCATTTTGCTAACCGGTCGGGACGAGCA-TCAAAGGACT-TCCACCGAGACA 737
||||||||||||| | |||||||| || || || | |||||||| | | |||||||| |
Sbjct 504 TTTCACTATCATTCTCCTAACCGGCCGAGATGA-AAGTCAAAGGAGTAT-CACCGAGAAA 561
Query 738 AATCTCCGGGATGCCGGTTATTCCGGTTGGGAA-CGTCTCCTCTTGAGAGGTCCA--AAT 794
|||||||| || |||||||||| ||||| |||| || ||||||||||| ||| || ||
Sbjct 562 AATCTCCGCGACGCCGGTTATTTCGGTT-GGAACCGACTCCTCTTGAGGGGT-CATGAA- 618
Query 795 GATCAAGG-GAAGTCAGCTACAAATTACAAATCCGAGCAGCGATCGAAACTGATTGAGGA 853
|||||||| ||| |||| ||| |||||||| |||||| || | ||| || | | ||
Sbjct 619 GATCAAGGAAAAG-CAGCAACACGGTACAAATCAGAGCAGAGAGCAAAAGTGGTCAAAGA 677
Query 854 AGGTTTCAAAATCCGTGGCAA-TAGC-GGTGATCAATGGAGTGACTTGCAAGGTTTTGCC 911
||| | || ||||| ||| || | || || ||||||||||||||||||||||||||||||
Sbjct 678 AGGCTACACAATCCATGG-AAGT-GCTGGCGATCAATGGAGTGACTTGCAAGGTTTTGCC 735
Query 912 GTGGCTGA-TCGTTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGA 962
||||| | |||||| ||||||||||||||||| |||||||| ||| |||||
Sbjct 736 GTGGCC-ACTCGTTCCTTCAAAGTCCCAAATCCGATGTACTATATTGCTTGA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5