BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29270.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889208 jgi|Araly1|889208|Al_scaffold_0007_1194 981 0.0
Ahg889207 jgi|Araly1|889207|Al_scaffold_0007_1193 845 0.0
Ahg491830 jgi|Araly1|491830|fgenesh2_kg.7__1263__AT4G29260.1 425 2e-118
> Ahg889208 jgi|Araly1|889208|Al_scaffold_0007_1194
Length=771
Score = 981 bits (531), Expect = 0.0
Identities = 695/775 (90%), Gaps = 8/775 (1%)
Strand=Plus/Plus
Query 35 ATGACTTTTTCTCGTAGCAGCTCGATTACGTTCTTCA-TCGTTGCTTTATTCACCGTCTT 93
||||| ||||||||||||||||||||||||||||||| || | ||||||||| |||||||
Sbjct 1 ATGACGTTTTCTCGTAGCAGCTCGATTACGTTCTTCATTC-TAGCTTTATTCGCCGTCTT 59
Query 94 AATTAATCCGGCGATCTCTTCTCGCGCCGCGTCCTTCATCAAGCTGCCTCGGTCTTCCAT 153
|||||||||||||||||||||||||||| | ||||||| ||||| ||||| ||||| ||
Sbjct 60 AATTAATCCGGCGATCTCTTCTCGCGCCTCATCCTTCACCAAGCCGCCTCTTTCTTCTAT 119
Query 154 CGCTTCATACTGCGAGAGTTGGAGATTAGCCGCTGAGACCAACAATGTTGGACCCTGGAA 213
||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||
Sbjct 120 CGCTTCATACTGCGAGAGTTGGAGATTAGCCGCCGAGACCAACAATGCTGGAACTTGGAA 179
Query 214 GGTGATTCCGTCCCAATGCGAAAACTATATTAAAAACTACATCAACGGAGGCCAGTTCGA 273
|||| |||||||||||||||||||||| |||||||||| |||| || ||| ||||||||
Sbjct 180 GGTGGTTCCGTCCCAATGCGAAAACTACGTTAAAAACTATATCAGCGAAGGGCAGTTCGA 239
Query 274 CAAAGACTACGATGTAGTCGCTAGTTACGCCATTGACTACGCTAAAACGGTCAAGGTTGG 333
|||||| |||||| |||| ||||||||||| || | ||||||||||||||||||| ||||
Sbjct 240 CAAAGATTACGATCTAGTTGCTAGTTACGCTATCGCCTACGCTAAAACGGTCAAGCTTGG 299
Query 334 CGGAGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGA 393
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGAGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGA 359
Query 394 GTACTACAAGGCTAATGGTTACGGGTCTGAACCGTACGATAGTATTAAATACAATGAGGT 453
||||||||||||| |||||||||||||| |||| || |||| || | || ||||||| |
Sbjct 360 GTACTACAAGGCTCATGGTTACGGGTCTCAACCTTATGATAATACTCTATTCAATGAG-T 418
Query 454 GG-TGGAAAAAGGAAAAGACCCAGG-TTATGATGCGAGCTTGAGGCTCTACAAAGCTCTC 511
|| ||| |||||||| || |||||| || ||||||||||||||| |||||||| || |||
Sbjct 419 GGGTGGTAAAAGGAACAGCCCCAGGGTT-TGATGCGAGCTTGAGACTCTACAATGCCCTC 477
Query 512 AAGAAACTTGGTTTCACTATCATTTTACTAACTGGCCGAGACGAAGGTCATAGAAGTGTC 571
|||||||||||||||||||||||||||||||| |||||||| ||| |||| |||||| |
Sbjct 478 AAGAAACTTGGTTTCACTATCATTTTACTAACCGGCCGAGATGAAAGTCAGAGAAGTATA 537
Query 572 ACCGAGAAAAATCTTCGGGATGCCGGTTATTTCGGTTGGAACCGACTCCTCTTGAGGGGT 631
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACCGAGAAAAATCTTCGGGACGCCGGTTATTTCGGTTGGAACCGACTCCTCTTGAGGGGT 597
Query 632 CAAAATGATCAAGGGAAAAC-AGCAACACAATACAAATCAGAGCAGCGATCACAAGTTGT 690
||||||||||||| |||| ||||||| |||||||||||||| ||||| |||| ||
Sbjct 598 AAAAATGATCAAGG-AAAAGTAGCAACATTGTACAAATCAGAGCAAAGATCAAAAGTGGT 656
Query 691 AAAAGAAGGCTACACAATCCATGGTAATACTGGAGATCAATGGAGTGACTTGCTAGGTTT 750
||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||
Sbjct 657 TAAAGAAGGCTACACAATCCATGGAAATACCGGCGATCAATGGAGTGACTTGCAAGGTTT 716
Query 751 TGCCGTGGCTTCTCGTTCTTTCAAAGTCCCAAATCCCATGTACTATGTTGCTTGA 805
||||||||| ||||||| |||||||| || ||||||||||||||| || |||||
Sbjct 717 TGCCGTGGCAGCTCGTTCCTTCAAAGTTCCTAATCCCATGTACTATATTCCTTGA 771
> Ahg889207 jgi|Araly1|889207|Al_scaffold_0007_1193
Length=786
Score = 845 bits (457), Expect = 0.0
Identities = 686/793 (87%), Gaps = 29/793 (4%)
Strand=Plus/Plus
Query 35 ATGACTTTTTCTCGTAGCAGCTCGATTACGTTCTTCATCGTTGCTTTATTCACCGTCTTA 94
||||| ||||||||||||||||||||| | ||||||||| ||||||||||| |||||||
Sbjct 1 ATGACGTTTTCTCGTAGCAGCTCGATTTCCTTCTTCATCCTTGCTTTATTCGGCGTCTTA 60
Query 95 ATTAATCCGGCGATCTCTTCTCGCGCCGCGTCCTTCATCAAGCT-----G--CC-TCG-- 144
||| ||||||||||||||||||||| | | ||||||||||||| | || |||
Sbjct 61 ATTCATCCGGCGATCTCTTCTCGCGTCTCCACCTTCATCAAGCTCCCGAGCTCCGTCGAA 120
Query 145 ----G-TCTTCC-ATCGCTTCATACTGCGAGAGTTGGAGATTAGCCGCTGAGACCAACAA 198
| |||||| | || ||| ||||||||| | |||||||| || || |||||||||||
Sbjct 121 TCTCGCTCTTCCGA-CGTTTCCTACTGCGAGGGCTGGAGATTGGCTGCCGAGACCAACAA 179
Query 199 TGTTGGACCCTGGAAGGTGATTCCGTCCCAATGCGAAAACTATATTAAAAACTACATCAA 258
|| ||| |||||| |||| ||||||| |||||||||||||| |||||||||| |||||
Sbjct 180 TGCCGGAACCTGGAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATATCAA 239
Query 259 CGGAGGCCAGTTCGACAAAGACTACGATGTAGTCGCTAGTTACGCCATTGACTACGCTAA 318
|||||||||||| |||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 240 CGGAGGCCAGTTTGACAAAGATTACGATGTAGTCGCTAGTTACGCCATCGCCTACGCTAA 299
Query 319 AACGGTCAAGGTTGGCGG-AGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGC 377
|||| |||| ||| ||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 300 AACGATCAATCTTGCCGGCA-AAGAAAAGGACGCGTGGGTCTTTGACATCGATGAGACGC 358
Query 378 TTCTCTCCAATATTGAGTACTACAAGGCTAATGGTTACGGGTCTGAACCGTACGATAGTA 437
||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||| | ||
Sbjct 359 TTCTCTCGAATCTTGAGTACTACAAGGCTCATGGTTACGGGTCTCAACCGTACGACAATA 418
Query 438 -TTAAATACAATGAGGTGG-TGGAAAAAGGAAAAGACCCAGGTTATGATGCGAGCTTGAG 495
|| | ||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||
Sbjct 419 CTTTGTT-CAATGAG-TGGGTGGTAAAAGGAAAAGCCCCAGGTTTTGATGCGAGCTTGAG 476
Query 496 GCTCTACAAAGCTCTCAAGAAACTTGGTTTCACTATCATTTTACTAACTGGCCGAGACGA 555
||||| |||||||||||||||||||||||||||||||||| | ||||| |||||||| ||
Sbjct 477 GCTCTTCAAAGCTCTCAAGAAACTTGGTTTCACTATCATTCTCCTAACCGGCCGAGATGA 536
Query 556 AGGTCATAGAAGTGTCACCGAGAAAAATCTTCGGGATGCCGGTTATTTCGGTTGGAACCG 615
| |||| || ||| |||||||||||||||| || || |||||||||||||||||||||||
Sbjct 537 AAGTCAAAGGAGTATCACCGAGAAAAATCTCCGCGACGCCGGTTATTTCGGTTGGAACCG 596
Query 616 ACTCCTCTTGAGGGGTCAA-AATGATCAAGGGAAAA-CAGCAACACAATACAAATCAGAG 673
|||||||||||||||||| || |||||||| |||| ||||||||| ||||||||||||
Sbjct 597 ACTCCTCTTGAGGGGTCATGAA-GATCAAGG-AAAAGCAGCAACACGGTACAAATCAGAG 654
Query 674 CAGCGATCACAAGTTGTAAAAGAAGGCTACACAATCCATGGTAA-TACTGGAGATCAATG 732
||| || || |||| || ||||||||||||||||||||||| || | |||| ||||||||
Sbjct 655 CAGAGAGCAAAAGTGGTCAAAGAAGGCTACACAATCCATGG-AAGTGCTGGCGATCAATG 713
Query 733 GAGTGACTTGCTAGGTTTTGCCGTGGCTTCTCGTTCTTTCAAAGTCCCAAATCCCATGTA 792
||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 714 GAGTGACTTGCAAGGTTTTGCCGTGGCCACTCGTTCCTTCAAAGTCCCAAATCCGATGTA 773
Query 793 CTATGTTGCTTGA 805
|||| ||||||||
Sbjct 774 CTATATTGCTTGA 786
> Ahg491830 jgi|Araly1|491830|fgenesh2_kg.7__1263__AT4G29260.1
Length=918
Score = 425 bits (230), Expect = 2e-118
Identities = 403/485 (83%), Gaps = 18/485 (4%)
Strand=Plus/Plus
Query 334 CGGAGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGA 393
||| ||||| ||||||| |||| |||| || ||||| |||||||||||| | ||||||||
Sbjct 443 CGGCGACGGTAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATATTGA 502
Query 394 GTACTACAAGGCTAATGGTTACGGGTCTGAACCGTACGATAG-TATTAAATACAATGAGG 452
|||||||||||| |||||||||||||||||||||| || | || || | | ||| |
Sbjct 503 CTACTACAAGGCTCATGGTTACGGGTCTGAACCGTATGA-CGATAATAGTTTTAGTGA-G 560
Query 453 T-GGTGGAAAAAGGAAAAGAC-CCAGGTTATGATGCGAGCTTGAGGCTCTACAAAGCTCT 510
| ||||||| |||||| || | |||| || ||||||||||||||| || ||||| |||||
Sbjct 561 TGGGTGGAACAAGGAACAG-CTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCT 619
Query 511 CAAGAAACTTGGTTTCACTATCATTTTACTAACTGGCCGAGACGAAGG-TCATAGAAGTG 569
|||||||||||||||||||||||||| ||||| || || |||| ||| ||| || |||
Sbjct 620 AAAGAAACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACG-AGGATCAAAGGAGT- 677
Query 570 T-CACCGAGAAAAATCTTCGGGATGCCGGTTATTTCGGTT-GGAACCGACTCCTCTTGAG 627
| |||||||| |||||| || ||||||||||||| ||||| |||| || |||||||||||
Sbjct 678 TCCACCGAGACAAATCTCCGCGATGCCGGTTATTCCGGTTGGGAA-CGTCTCCTCTTGAG 736
Query 628 GGGTCAAAATGATCAAGGGAAAACAGCAACACAA-TACAAATCAGAGCAGCGATC-ACAA 685
|||| |||||||||||||||| |||| ||| || |||||||| ||||||||||| | ||
Sbjct 737 AGGTCCAAATGATCAAGGGAAATCAGCTACA-AATTACAAATCTGAGCAGCGATCGA-AA 794
Query 686 GTTGTAAAAGAAGGCTACACAATCCATGGTAATACTGGAGATCAATGGAGTGA-CTTGCT 744
| | | ||||| | || ||||| ||| ||| | || ||||||||||| || ||| ||
Sbjct 795 CTAATTGAGGAAGGTTTCAAAATCCGTGGCAATTCCGGTGATCAATGGAGCGATCTT-CT 853
Query 745 AGGTTTTGCCGTGGCTTCTCGTTCTTTCAAAGTCCCAAATCCCATGTACTATGTTGCTTG 804
|||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||
Sbjct 854 AGGTTTTGCCGTGGCTGATCGGTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTG 913
Query 805 ATCAC 809
|||||
Sbjct 914 ATCAC 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5