BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29273.1

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg320410 jgi|Araly1|320410|fgenesh1_pm.C_scaffold_4000467           333    3e-91


> Ahg320410 jgi|Araly1|320410|fgenesh1_pm.C_scaffold_4000467
Length=234

 Score =  333 bits (180),  Expect = 3e-91
 Identities = 216/234 (92%), Gaps = 0/234 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCAACATATCATGGTCTCATTTTCTTATACTCATGCTTGTGTTCTCAGTGGTTAAG  60
            ||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||| ||
Sbjct  1    ATGGCCAACATATCATGTTCTCATTTCCTCATACTCATGCTTGTGTTATCAGTGGTTGAG  60

Query  61   AAGGGTAAGGGAGATCAGACTGATAAGTATTGTACTATAATCATTGATCCAAGAACTCCA  120
            |||| ||||||| |||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct  61   AAGGCTAAGGGATATCAAACTGATAAATATTGTACTATAATCCTTGATCCAAGAACTCCA  120

Query  121  TGTGACCTTGTTGATTGTCGCCTAAGCTGCTATACGGGGTACAATGGAGTTGGGAAATGT  180
            ||||| |||||||| ||||| |||| ||||||| ||||||||||||||||||| ||||||
Sbjct  121  TGTGATCTTGTTGACTGTCGTCTAAACTGCTATTCGGGGTACAATGGAGTTGGAAAATGT  180

Query  181  ATTGCATCCAAAGCTAGTAGAACTCCTAATTGTGTGTGTACTTATAATTGTTAA  234
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTGCATCCAAAGCCGGTAGAACTCCTAATTGTGTGTGTACTTATAATTGTTAA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8057723071


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5