BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29276.1
Length=394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889207 jgi|Araly1|889207|Al_scaffold_0007_1193 435 2e-121
Ahg889208 jgi|Araly1|889208|Al_scaffold_0007_1194 254 5e-67
Ahg932731 jgi|Araly1|932731|scaffold_400719.1 196 8e-50
> Ahg889207 jgi|Araly1|889207|Al_scaffold_0007_1193
Length=786
Score = 435 bits (235), Expect = 2e-121
Identities = 351/403 (87%), Gaps = 24/403 (6%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCTCGTAGCAGCTCGATCTCCTTCTTCATCCTCACTTTTTATTC-GCTGTC 59
|||||||||||||||||||||||||| |||||||||||||| | ||||||| || |||
Sbjct 1 ATGACGTTTTCTCGTAGCAGCTCGATTTCCTTCTTCATCCTTGC--TTTATTCGGC-GTC 57
Query 60 ATAATTAATCCTACGATCTCTTCACACGTCT-CATCCTTCATCAAGCTCCAGAGCTCCGA 118
||||| |||| |||||||||| | ||||| || ||||||||||||||| ||||||||
Sbjct 58 TTAATTCATCCGGCGATCTCTTCTCGCGTCTCCA-CCTTCATCAAGCTCCCGAGCTCCGT 116
Query 119 CGAATCTCGCTCTTCCGTCGCTTCCTACTGCGAGGGCTGGAGATTGACCGCCGAGACCAA 178
||||||||||||||||| || ||||||||||||||||||||||||| | |||||||||||
Sbjct 117 CGAATCTCGCTCTTCCGACGTTTCCTACTGCGAGGGCTGGAGATTGGCTGCCGAGACCAA 176
Query 179 CAATGCCGGAACCTGTAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATAT 238
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CAATGCCGGAACCTGGAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATAT 236
Query 239 CAAAAGCGGCCAGTTCGACAAAAATTACGATGTACTCGCTAGTTACGCCAT-----ACGG 293
||| | |||||||| |||||| ||||||||||| |||||||||||||||| |||
Sbjct 237 CAACGGAGGCCAGTTTGACAAAGATTACGATGTAGTCGCTAGTTACGCCATCGCCTACGC 296
Query 294 TAAAACGATCAATCTTGCCGG-AAACGGTAAGGACG--TG--T-TAT-AC---GATGAAA 343
||||||||||||||||||||| ||| | ||||||| || | | | || ||||| |
Sbjct 297 TAAAACGATCAATCTTGCCGGCAAA-GAAAAGGACGCGTGGGTCTTTGACATCGATGAGA 355
Query 344 CT-TT-TCTCGAATCTTGAGTACTACAAGGCTCATGGTTACGG 384
| || |||||||||||||||||||||||||||||||||||||
Sbjct 356 CGCTTCTCTCGAATCTTGAGTACTACAAGGCTCATGGTTACGG 398
> Ahg889208 jgi|Araly1|889208|Al_scaffold_0007_1194
Length=771
Score = 254 bits (137), Expect = 5e-67
Identities = 323/405 (80%), Gaps = 43/405 (11%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCTCGTAGCAGCTCGATCT-CCTTCTTCATCCTCACTTTTTATTCGCTGTC 59
|||||||||||||||||||||||||| | | |||||||| || | ||||||||| |||
Sbjct 1 ATGACGTTTTCTCGTAGCAGCTCGAT-TACGTTCTTCATTCT-A-GCTTTATTCGCCGTC 57
Query 60 ATAATTAATCCTACGATCTCTTCACACGTCTCATCCTTCATCAAGCTCCAGAGCTCCGAC 119
|||||||||| |||||||||| | || ||||||| | || | ||| || ||| |
Sbjct 58 TTAATTAATCCGGCGATCTCTTCTCGCGCCTCATCC-T--TC-A---CCA-AG--CCG-C 106
Query 120 GAATCTCGCTCTTCCGTCGCTTCCTACTGCGAGGGCTGGAGATTGA-CCGCCGAGACCAA 178
||| ||||| ||||||| ||||||||| | |||||||| | |||||||||||||
Sbjct 107 ----CTCTTTCTTCTATCGCTTCATACTGCGAGAGTTGGAGATT-AGCCGCCGAGACCAA 161
Query 179 CAATGCCGGAACCTGTAGGGTGGTTCCGTCTCAATGCGAAAACTACGTTAAAAACTATAT 238
|||||| ||||| || | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 162 CAATGCTGGAACTTGGAAGGTGGTTCCGTCCCAATGCGAAAACTACGTTAAAAACTATAT 221
Query 239 CAA--AAGCGGCCAGTTCGACAAAAATTACGATGTACTCGCTAGTTACGCCAT-----AC 291
|| ||| ||| ||||||||||| |||||||| || | ||||||||||| || ||
Sbjct 222 CAGCGAAG-GGC-AGTTCGACAAAGATTACGATCTAGTTGCTAGTTACGCTATCGCCTAC 279
Query 292 GGTAAAACGATCAATCTTG-CCGGAAACGGTAAGGACG--TG--T-TAT-AC---GATGA 341
| ||||||| |||| |||| ||| | |||| ||||||| || | | | || |||||
Sbjct 280 GCTAAAACGGTCAAGCTTGGCCG-AGACGGCAAGGACGCGTGGGTCTTTGACATCGATGA 338
Query 342 AACT-TT-TCTCGAATCTTGAGTACTACAAGGCTCATGGTTACGG 384
|| || |||| ||| ||||||||||||||||||||||||||||
Sbjct 339 GACGCTTCTCTCCAATATTGAGTACTACAAGGCTCATGGTTACGG 383
> Ahg932731 jgi|Araly1|932731|scaffold_400719.1
Length=293
Score = 196 bits (106), Expect = 8e-50
Identities = 169/199 (85%), Gaps = 5/199 (3%)
Strand=Plus/Plus
Query 7 TTTTCTCGTAGCAGCTCGATCTCCTTCTTCATCCTCACTTTTTATTCGCTGTCATAATTA 66
|||||||||||||||| || |||||||||| |||| | ||||||||| ||| | |||
Sbjct 27 TTTTCTCGTAGCAGCTTAATTTCCTTCTTCAGCCTCGC--TTTATTCGCCGTC-T--TTA 81
Query 67 ATCCTACGATCTCTTCACACGTCTCATCCTTCATCAAGCTCCAGAGCTCCGACGAATCTC 126
|||| || |||||||||| ||| | |||||||| ||||||| |||||||| |||||||
Sbjct 82 ATCCAACAATCTCTTCACGTGTCCCTTCCTTCATTAAGCTCCCGAGCTCCGTCGAATCTA 141
Query 127 GCTCTTCCGTCGCTTCCTACTGCGAGGGCTGGAGATTGACCGCCGAGACCAACAATGCCG 186
||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||||| |
Sbjct 142 GCTCTTCCGTCGCTTCCTACTGCGAGGGCTGGAAATTGGCTGCCGAGACCGACAATGCAG 201
Query 187 GAACCTGTAGGGTGGTTCC 205
||| || | |||||||||
Sbjct 202 GAAAGTGGAAGGTGGTTCC 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14117567930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5