BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29280.1
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491828 jgi|Araly1|491828|fgenesh2_kg.7__1261__AT4G29280.1 296 4e-80
Ahg320410 jgi|Araly1|320410|fgenesh1_pm.C_scaffold_4000467 156 7e-38
> Ahg491828 jgi|Araly1|491828|fgenesh2_kg.7__1261__AT4G29280.1
Length=255
Score = 296 bits (160), Expect = 4e-80
Identities = 214/239 (90%), Gaps = 8/239 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAAGATATCATGTTCTTCTTTCTTCGTACTCATGCTAGTGTTTTCAG-TTTTTTC 59
||||| || ||||||||||||| ||||||| |||||||| | ||||| |||| |||| |
Sbjct 1 ATGGCCAAAATATCATGTTCTTATTTCTTCATACTCATGTTTGTGTTCTCAGCTTTTGT- 59
Query 60 ATTGGTTGAGAAGGCTAAAGGAGATGAACGTTGTACCATAATCATTCATCCAGGATCTCC 119
|||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 ATTGGTTGAGAAGGTTAAGGGAGATGAACGTTGTACTATAATCATTCATCCAGGATCTCC 119
Query 120 ATGTGACCCTTCTGATTGT-GTTC-AGTACTGCTATGCGGAGTACAATGGAGTTGGAAAA 177
|||||||||| |||||||| | || | ||||| | |||||| ||||||||||||||| ||
Sbjct 120 ATGTGACCCTCCTGATTGTCG-TCTA-TACTGTTTTGCGGAATACAATGGAGTTGGAGAA 177
Query 178 TGTATTGCATCCAAACCTGGTAGAAGTGCTAATTGTATGTGT--ACTTATAATTGTTAA 234
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 178 TGTATTGCATCCAAACCTGGTAGAACTGCTAATTGTATGTGTGTACTTATAATTGTTAA 236
> Ahg320410 jgi|Araly1|320410|fgenesh1_pm.C_scaffold_4000467
Length=234
Score = 156 bits (84), Expect = 7e-38
Identities = 192/242 (79%), Gaps = 16/242 (7%)
Strand=Plus/Plus
Query 1 ATGGCTAAGATATCATGTTCTTC-TTTCTTCGTACTCATGCTAGTGTTTTCAGTTTTTTC 59
||||| || ||||||||||| || |||| || |||||||||| ||||| |||| | ||
Sbjct 1 ATGGCCAACATATCATGTTC-TCATTTCCTCATACTCATGCTTGTGTTATCAG-TGGTTG 58
Query 60 A-TTGGTTGAGAAGGCTA--AAGGAGATGAACGTTGTACCATAATCATTCATCCAGGATC 116
| || | | | || || || ||| || |||||| |||||| || ||||| || |
Sbjct 59 AGAAGGCT-A-AGGGATATCAAACTGATAAATATTGTACTATAATCCTTGATCCAAGAAC 116
Query 117 TCCATGTGACCCTT-CTGATTGT-GTTC-AGTACTGCTATGCGGAGTACAATGGAGTTGG 173
||||||||| ||| ||| ||| | || | |||||||| ||| |||||||||||||||
Sbjct 117 TCCATGTGA-TCTTGTTGACTGTCG-TCTA-AACTGCTATTCGGGGTACAATGGAGTTGG 173
Query 174 AAAATGTATTGCATCCAAA-CCTGGTAGAAGTGCTAATTGTATGTGTACTTATAATTGTT 232
||||||||||||||||||| || ||||||| | |||||||| ||||||||||||||||||
Sbjct 174 AAAATGTATTGCATCCAAAGCC-GGTAGAACTCCTAATTGTGTGTGTACTTATAATTGTT 232
Query 233 AA 234
||
Sbjct 233 AA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8057723071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5