BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29285.1

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491827 jgi|Araly1|491827|fgenesh2_kg.7__1260__AT4G29285.1         641    0.0  


> Ahg491827 jgi|Araly1|491827|fgenesh2_kg.7__1260__AT4G29285.1
Length=434

 Score =  641 bits (347),  Expect = 0.0
 Identities = 407/436 (93%), Gaps = 4/436 (1%)
 Strand=Plus/Plus

Query  1    ATTTCTCTCTACCATTTTCAATATCAAAAAGTTTCTTCAAACAAACAAGTATTAGATTAA  60
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATTTCTCTATACCATTTTCAATATCAAAAAGTTTCTTCAAACAAACAAGTATTAGATTAA  60

Query  61   CATTATCCTCTTCATTTTCAGCAATTCATGGCTAAACTAATATATTCGTATCTATTCATC  120
            || |||| |||| |||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct  61   CACTATCTTCTTAATTTTCAGAAATTCATGGCTAAACTATTATGTTCGTATCTATTCATC  120

Query  121  TCCATGTTTGTTCTCTCAGTTCTTTTGGCGTTGCCAAATGCAGAAGGAGCGGATATTAAA  180
            ||||||||||||||||||||| ||||||| |||||||||||||| |||||| |||| |||
Sbjct  121  TCCATGTTTGTTCTCTCAGTTTTTTTGGCTTTGCCAAATGCAGAGGGAGCGAATATAAAA  180

Query  181  AGATGTGTTGTGGACGTGAAGCTTAGCAAGCCATGCACTTTTCAAGAATGCATACCACTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGATGTGTTGTGGACGTGAAGCTTAGCAAGCCATGCACTTTTCAAGAATGCATACCACTT  240

Query  241  TGTTTTCAAAGGTACAATGGGAATGGCGTTTGTACCGGAAAGAAAAACGAAATTTGCACT  300
            |||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct  241  TGTTTTCAAAAGTACAACGGGAATGGCGTTTGTACCGGAAATAAAAACCAAATTTGCACT  300

Query  301  TGCGCCTACAATTGTTAAGCTATAATATGTT-GTTAG-CTAGACCAAAAATCTTTAATGT  358
            ||||| ||||| |||||||||| | |||||| ||||  ||||||||||||||||||||||
Sbjct  301  TGCGCTTACAACTGTTAAGCTA-A-TATGTTTGTTAAACTAGACCAAAAATCTTTAATGT  358

Query  359  TATGGTGCCTTAGTAATCCTTGACTCCATGTATTTGGAGGATATGATCATATGAATAAAG  418
            |||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct  359  TATGGTGCCTTAATAATCCTTGACTTCATGTATTTGGAGAATATGATAATATGAATAAAG  418

Query  419  ATCTTTTAAATTTTCT  434
            |||| |||||| ||||
Sbjct  419  ATCTATTAAATATTCT  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15681947079


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5