BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29285.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value Ahg491827 jgi|Araly1|491827|fgenesh2_kg.7__1260__AT4G29285.1 641 0.0 > Ahg491827 jgi|Araly1|491827|fgenesh2_kg.7__1260__AT4G29285.1 Length=434 Score = 641 bits (347), Expect = 0.0 Identities = 407/436 (93%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 1 ATTTCTCTCTACCATTTTCAATATCAAAAAGTTTCTTCAAACAAACAAGTATTAGATTAA 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTTCTCTATACCATTTTCAATATCAAAAAGTTTCTTCAAACAAACAAGTATTAGATTAA 60 Query 61 CATTATCCTCTTCATTTTCAGCAATTCATGGCTAAACTAATATATTCGTATCTATTCATC 120 || |||| |||| |||||||| ||||||||||||||||| ||| |||||||||||||||| Sbjct 61 CACTATCTTCTTAATTTTCAGAAATTCATGGCTAAACTATTATGTTCGTATCTATTCATC 120 Query 121 TCCATGTTTGTTCTCTCAGTTCTTTTGGCGTTGCCAAATGCAGAAGGAGCGGATATTAAA 180 ||||||||||||||||||||| ||||||| |||||||||||||| |||||| |||| ||| Sbjct 121 TCCATGTTTGTTCTCTCAGTTTTTTTGGCTTTGCCAAATGCAGAGGGAGCGAATATAAAA 180 Query 181 AGATGTGTTGTGGACGTGAAGCTTAGCAAGCCATGCACTTTTCAAGAATGCATACCACTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGATGTGTTGTGGACGTGAAGCTTAGCAAGCCATGCACTTTTCAAGAATGCATACCACTT 240 Query 241 TGTTTTCAAAGGTACAATGGGAATGGCGTTTGTACCGGAAAGAAAAACGAAATTTGCACT 300 |||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||| Sbjct 241 TGTTTTCAAAAGTACAACGGGAATGGCGTTTGTACCGGAAATAAAAACCAAATTTGCACT 300 Query 301 TGCGCCTACAATTGTTAAGCTATAATATGTT-GTTAG-CTAGACCAAAAATCTTTAATGT 358 ||||| ||||| |||||||||| | |||||| |||| |||||||||||||||||||||| Sbjct 301 TGCGCTTACAACTGTTAAGCTA-A-TATGTTTGTTAAACTAGACCAAAAATCTTTAATGT 358 Query 359 TATGGTGCCTTAGTAATCCTTGACTCCATGTATTTGGAGGATATGATCATATGAATAAAG 418 |||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||| Sbjct 359 TATGGTGCCTTAATAATCCTTGACTTCATGTATTTGGAGAATATGATAATATGAATAAAG 418 Query 419 ATCTTTTAAATTTTCT 434 |||| |||||| |||| Sbjct 419 ATCTATTAAATATTCT 434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15681947079 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5