BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29290.1

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328779 jgi|Araly1|328779|fgenesh1_pm.C_scaffold_7001006           383    3e-106


> Ahg328779 jgi|Araly1|328779|fgenesh1_pm.C_scaffold_7001006
Length=234

 Score =  383 bits (207),  Expect = 3e-106
 Identities = 225/234 (96%), Gaps = 0/234 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCAAGTTATCATGTTCTTATTTCTTTATACTCATGCTTGTGTTCTCAGCTCTTTTA  60
            ||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||
Sbjct  1    ATGGCCAAGTTATCATGTTCTTATTTCCTTGTACTCATGCTTGTGTGCTCAGCTTTTTTA  60

Query  61   ATGGTTGAATGTGATGAGGGGAAGCGATGCCATACGACGATTGACAAGGGAAATTTTTGT  120
            ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct  61   ATGGTTGAATGTGATGAGGGGAAGCGATGTCATACGACGATTGACTAGGCAAATTTTTGT  120

Query  121  GATCTTGTCGATTGTCGTTTAAGCTGCTTTTCTGGATACAATGGAGTTGGAAAATGCTTT  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  GATCTTGTCGATTGTCGTTTAAGCTGCTTTTCTGGATACAATGGAGTTGGAAAATGTTTT  180

Query  181  GACGATCCTAAAGTTCCTGGACGTTCTAATTGTGGTTGTCTATACAATTGTTAG  234
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  181  GACGATCCTAAAGTTCCTGGACGTTCTAATTGTGGTTGTCTATATAATTGTTAG  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8057723071


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5