BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29300.1

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491825 jgi|Araly1|491825|fgenesh2_kg.7__1258__AT4G29300.1         494    3e-139


> Ahg491825 jgi|Araly1|491825|fgenesh2_kg.7__1258__AT4G29300.1
Length=376

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 346/383 (90%), Gaps = 10/383 (3%)
 Strand=Plus/Plus

Query  1    TATTTTACAAACACTGATAACTTTTGTTTTCCAATACTGATCAATGGCGAAGTTATCATG  60
            |||||||||||||||| |||||||||||||  |||| |||||||||||||||||||| | 
Sbjct  1    TATTTTACAAACACTGGTAACTTTTGTTTTGTAATATTGATCAATGGCGAAGTTATCCTT  60

Query  61   TTCTTATCTT-CTTGTA-TTCATGCTAGTGTTCTCAGCTATTTTAATGGTTGAAAAAGTT  118
            ||||||| || |||||| || ||||| ||| |||||||| ||||||||||||| | ||||
Sbjct  61   TTCTTAT-TTCCTTGTACTT-ATGCTCGTGCTCTCAGCTTTTTTAATGGTTGAGAGAGTT  118

Query  119  GAGGGAGAGGAATGTCGTTTAACGATTGACAAAGCAACTCCATG-TCATCTTAGTGATTG  177
            |||||| || |||||||||| |  ||| ||||||||||| |||| || |||||| |||||
Sbjct  119  GAGGGAAAGCAATGTCGTTTGATTATTTACAAAGCAACTGCATGTTC-TCTTAGCGATTG  177

Query  178  CCGTTTAAGCTGCTATACTGGATATAATGGAGTTGGAGAATGTTTTGATGATCCTAATGT  237
             |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  178  TCGTTTAAGCTGCTATACTGGATATAATGGAGTTGGAGAGTGTTTTGATGATCCAAATGT  237

Query  238  TCCTGGACCTGATAACTGTGGTTGTCGCTATAATTGTTAGAGCTACTATTTTATAATTGA  297
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  238  TCCTGGACCTGATAACTGTGGTTGTCTCTATAATTGTTAGAGCTACTATTTTATAATTGA  297

Query  298  TATGGTATAATAAGTATTCGATTTTCATAATCCGATATGAATAAATTGCAGAGATTATAT  357
            |||| ||| ||||||||| ||||||| || |||||||||||||||||||||||||| | |
Sbjct  298  TATGATATTATAAGTATTTGATTTTCTTA-TCCGATATGAATAAATTGCAGAGATT-T-T  354

Query  358  TAATTACTTTATTGTTAATCTTT  380
             ||||||||||||||||||||||
Sbjct  355  -AATTACTTTATTGTTAATCTTT  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15147768833


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5