BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G29300.1 Length=421 Score E Sequences producing significant alignments: (Bits) Value Ahg491825 jgi|Araly1|491825|fgenesh2_kg.7__1258__AT4G29300.1 494 3e-139 > Ahg491825 jgi|Araly1|491825|fgenesh2_kg.7__1258__AT4G29300.1 Length=376 Score = 494 bits (267), Expect = 3e-139 Identities = 346/383 (90%), Gaps = 10/383 (3%) Strand=Plus/Plus Query 1 TATTTTACAAACACTGATAACTTTTGTTTTCCAATACTGATCAATGGCGAAGTTATCATG 60 |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| | Sbjct 1 TATTTTACAAACACTGGTAACTTTTGTTTTGTAATATTGATCAATGGCGAAGTTATCCTT 60 Query 61 TTCTTATCTT-CTTGTA-TTCATGCTAGTGTTCTCAGCTATTTTAATGGTTGAAAAAGTT 118 ||||||| || |||||| || ||||| ||| |||||||| ||||||||||||| | |||| Sbjct 61 TTCTTAT-TTCCTTGTACTT-ATGCTCGTGCTCTCAGCTTTTTTAATGGTTGAGAGAGTT 118 Query 119 GAGGGAGAGGAATGTCGTTTAACGATTGACAAAGCAACTCCATG-TCATCTTAGTGATTG 177 |||||| || |||||||||| | ||| ||||||||||| |||| || |||||| ||||| Sbjct 119 GAGGGAAAGCAATGTCGTTTGATTATTTACAAAGCAACTGCATGTTC-TCTTAGCGATTG 177 Query 178 CCGTTTAAGCTGCTATACTGGATATAATGGAGTTGGAGAATGTTTTGATGATCCTAATGT 237 |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 178 TCGTTTAAGCTGCTATACTGGATATAATGGAGTTGGAGAGTGTTTTGATGATCCAAATGT 237 Query 238 TCCTGGACCTGATAACTGTGGTTGTCGCTATAATTGTTAGAGCTACTATTTTATAATTGA 297 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 238 TCCTGGACCTGATAACTGTGGTTGTCTCTATAATTGTTAGAGCTACTATTTTATAATTGA 297 Query 298 TATGGTATAATAAGTATTCGATTTTCATAATCCGATATGAATAAATTGCAGAGATTATAT 357 |||| ||| ||||||||| ||||||| || |||||||||||||||||||||||||| | | Sbjct 298 TATGATATTATAAGTATTTGATTTTCTTA-TCCGATATGAATAAATTGCAGAGATT-T-T 354 Query 358 TAATTACTTTATTGTTAATCTTT 380 |||||||||||||||||||||| Sbjct 355 -AATTACTTTATTGTTAATCTTT 376 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15147768833 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5