BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29310.1
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945090 jgi|Araly1|945090|scaffold_701319.1 2158 0.0
> Ahg945090 jgi|Araly1|945090|scaffold_701319.1
Length=1317
Score = 2158 bits (1168), Expect = 0.0
Identities = 1263/1310 (96%), Gaps = 1/1310 (0%)
Strand=Plus/Plus
Query 95 AACACTCGAAGGTTTTTGTGATGGATCCATGTCCATTTGTACGGCTAACAATAGATTCAC 154
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACACTCGAAGGGTTTTGTGATGGATCCATGTCCATTTGTACGGCTAACAATAGATTCAC 60
Query 155 TAGCTTTGAGACTACCGGAGACAGCGACGAACAAGCAAATCGGCGGCGAAGTACATCCTT 214
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TAGCGTTGAGACTACCGGAGACAGCGACGAACAAGCAAATCGGCGGCGAAATACATCCTT 120
Query 215 CTTCTACGCCGTGTTACTGCAAACTCCGGATCAAACATTTCCCTTCACAGAAAGCACTTC 274
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CTTCAACGCCGTGTTACTGCAAACTCCGGATCAAACATTTCCCTTCCCAGAAAGCACTTC 180
Query 275 TCCCTCTCTCTTCCTTCTCCGACGCTTCATCTCCACCGGAATCTTCCACTTCAGCTCCGG 334
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 181 TCCCTCTCTCTTCCTTCTCCGACGCTTCGTCTCCGCCGGAATCTTCCACTTCAGCTCCGG 240
Query 335 GATTTCACCTCGACGCCGACGCGATCCGACGAATTTCCGGTAAGAAGATCTCACTCCGTG 394
||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
Sbjct 241 GATTTCACCTCGACGCCGAAGCTATCCGACGAGTTTCCGGTAAGAAGATCTCACTCCGAG 300
Query 395 TCTCTGTTTACGCCGGTCGTACTGGTCACACTTGCGGCGTCGCTTCAGGGAAACTTCTAG 454
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 301 TCTCTGTTTACGCCGGTCGTACTGGTCACACTTGCGGCGTCGCTTCCGGGAAGCTTTTAG 360
Query 455 GTAAAGTCGAAGTAGCGGTGGATCTCGCGGCGGCGTTGTCTAGAACCGTCGCGTTTCATA 514
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAAAGTCGAAGTAGCGGTGGATCTCGCGGCGGCGTTGTCTAGAACCGTCGCGTTTCATA 420
Query 515 ACGGATGGAAGAAACTCGGTGGAGATGGAGATAAACCGTCGGCTAGATTACATCTATTGG 574
||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |||
Sbjct 421 ACGGATGGAAGAAACTCGGTGGAGAAGGAGATAAACCGTCGGCTCGGTTACATCTACTGG 480
Query 575 TTTGTGCTGAACCGGATCCTCGGTTTGTGTTTCAATTTGGAGGTGAACCGGAATGTAGTC 634
|| ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 481 TTCGTGCTGAACCGGATCCTCGGTTTGTATTTCAATTCGGTGGTGAACCGGAATGTAGTC 540
Query 635 CTGTGGTTTACCAGATTCAAGATAATCTCAAACAACCTGTCTTCAGCTGCAAATTCAGCT 694
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 541 CTGTGGTTTACCAGATTCAAGATAATCTCAAACAGCCCGTCTTCAGCTGCAAATTCAGCT 600
Query 695 CCGATCGTAACGGAAGATCTCGGTCTCTACCATCAGGATTTACATATAGTAGTAGAGGAT 754
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 CCGATCGCAACGGAAGATCTCGGTCTCTACCATCAGGATTCACATATAGTAGTAGAGGAT 660
Query 755 GGATTACAAGAACATTATCAGGTGACCAGTGGGAAAAGAAACAAGCGAGAGAACGTAAAG 814
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 661 GGATCACAAGAACATTATCAGGTGACCAATGGGAAAAGAAACAAGCGAGAGAACGTAAAG 720
Query 815 GTTGGATGATAACGATCCATGATCTTTCGGGATCACCTGTAGCAGCAGCTTCAATGATCA 874
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 721 GTTGGATGATAACGATCCATGATCTATCGGGATCACCAGTAGCAGCAGCTTCAATGATCA 780
Query 875 CTCCTTTCGTGGCATCTCCAGGGTCTGATCGTGTTTCTAGATCAAACCCTGGTGCGTGGC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTCCTTTCGTGGCATCTCCAGGGTCTGATCGTGTTTCTAGATCAAACCCTGGTGCGTGGC 840
Query 935 TAATCCTTAGGCCTCATGGGACTTGTGTCAGTAGTTGGAAACCGTGGGGACGTCTTGAGG 994
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 TAATCCTTAGGCCTCATGGGACTTGTGTCAGTAGCTGGAAACCGTGGGGACGTCTTGAGG 900
Query 995 CTTGGCGTGAGAGAGGAGCTATTGATGGATTGGGTTACAAGTTCGAGCTCGTGAGGGATA 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTGGCGTGAGAGAGGAGCTATTGATGGATTGGGTTACAAGTTCGAGCTCGTGAGGGATA 960
Query 1055 ACAGTACTAGCACCGGCATTCCTATTGCAGAAGGGACAATGAGCACAAAACAAGGAGGAA 1114
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATAGTACTAGCACCGGCATTCCTATTGCAGAAGGGACAATGAGCACAAAACAAGGAGGAA 1020
Query 1115 AGTTCAGCATTGACAGGAGAGTCTCAGGCCAGGGAGAGTCTCCGGCAATATCATCGCCGG 1174
||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||
Sbjct 1021 AGTTCAGCATTGACAGGAGAGTCTCAGGCCAAGGTGAGTCGCCGGCAATATCATCACCGG 1080
Query 1175 TGAAAGGGTTCGTGATGGGTTCGAGCGTCGAAGGAGAAGGGAAAGTGAGCAAGCCTGTGG 1234
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGAAAGGGTTCGTGATGGGTTCCAGCGTCGAAGGAGAAGGGAAAGTGAGCAAGCCTGTGG 1140
Query 1235 TCCACGTGGGAGCACAGCATGTGACTTGCATGGCCGACGCAGCTCTCTTCGTTGCTCTCT 1294
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 TCCATGTGGGAGCACAGCACGTGACTTGCATGGCCGACGCAGCTCTCTTCGTCGCTCTCT 1200
Query 1295 CTGCCGCCGTTGATCTAAGTGTCGACGCGTGTCAGCTCTTCTCTCGTAAGCTTCGTAAAG 1354
| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CCGCAGCCGTTGATCTTAGCGTCGACGCGTGTCAGCTCTTCTCTCGTAAGCTTCGTAAAG 1260
Query 1355 AGCTCTGTCACGACGACCAAAGCTCCCTCACGTGAAAATATGTTATCTCA 1404
||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1261 AGCTCTGTCACGACGACCAAAGCTCCCTCACGTGAAATTATGT-ATCTCA 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64524875030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5