BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29330.1
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491823 jgi|Araly1|491823|fgenesh2_kg.7__1256__AT4G29330.1 1568 0.0
> Ahg491823 jgi|Araly1|491823|fgenesh2_kg.7__1256__AT4G29330.1
Length=1024
Score = 1568 bits (849), Expect = 0.0
Identities = 971/1029 (94%), Gaps = 11/1029 (1%)
Strand=Plus/Plus
Query 58 TATATCGGATCTCGAATCTTGAATCGGACTCAGAACCT-CGGATCTTCGAAAATCGACGA 116
|||||||||| ||||||||||||||||||||||||| | |||||||| ||||||||| ||
Sbjct 1 TATATCGGATATCGAATCTTGAATCGGACTCAGAACTTCCGGATCTTGGAAAATCGAAGA 60
Query 117 ACATGTCTTCTCCTGGCGAATTCTATAACTCACTTCCACCTATAACCAAGGCTTATGGTA 176
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 61 ACATGTCTTCTCCTGGCGAATACTATAACTCACTTCCACCAATAACCAAGGCTTATGGTA 120
Query 177 CGTTGTGCTTTTTCACTAC-AGTAGCC-ACGCAGCTTGGCTTAGTTGCTCCCGTTCACAT 234
|||||||| |||||||||| | ||||| || ||||||||||| |||||||| || |||||
Sbjct 121 CGTTGTGCCTTTTCACTACTA-TAGCCAAC-CAGCTTGGCTTGGTTGCTCCTGTCCACAT 178
Query 235 TGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAGATCTGGAGGCTGATAACAAACTT 294
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TGCTTTATTTCCTCAACTTGTACTTAAGCAGTTCCAGATCTGGAGGCTGATATCAAACTT 238
Query 295 GTTTTTCCTCGGTGGTTTCTCTATCAATTTTGGAATACGTCTTTTGATGATAGCAAGATA 354
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 239 CTTTTTCCTCGGTGGTTTCTCTATCAATTTCGGAATACGTCTTTTGATGATAGCAAGATA 298
Query 355 TGGAGTTCAACTCGAGAAAGGGCCATTTGAAAGGCGGACAGCAGACTTTTTGTGGATGAT 414
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 299 TGGAGTTCAACTCGAGAAAGGGCCGTTTGAAAGGCGGACGGCAGACTTTTTGTGGATGAT 358
Query 415 GATCTTTGGATCCTTCACTCTATTGGTATTATCAGTCATACCATTTTTCTGGACACCGTT 474
||||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||
Sbjct 359 GATCTTTGGATCCTTCACTCTATTGGTTTTATCAGTCATACCATTTTTCTGGGCGCC-TT 417
Query 475 T-CTTGGTGTTTCACTTGTGTTCATGCTTCTTTATCTCTGGAGCCGAGAATTTCCAAATG 533
| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 418 TCCTTGGAGTTTCGCTTGTGTTCATGCTTCTATATCTCTGGAGCCGGGAATTTCCAAATG 477
Query 534 CCAACATCAGCCTATACGGTCTTGTCACTCTTAAGGCTTTCTACCTCCCATGGGCAATGC 593
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 CCAACATCAGCCTATACGGTCTTGTCACTCTCAAGGCTTTCTACCTCCCATGGGCAATGC 537
Query 594 TAGCACTTGATGTTATCTTCGGTTCTCCGATCATGCCAGATCTTCTTGGCATCATAGCTG 653
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 538 TAGCACTCGATGTTATCTTCGGTTCTCCGATCATGCCAGATCTTCTTGGCATCATAGCCG 597
Query 654 GACATCTATACTACTTCCTAACAGTCCTTCATCCTCTTGCTACCGGAAAAAACTACCTGA 713
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 598 GACATCTATACTACTTCCTTACAGTCCTCCATCCTCTTGCCACCGGAAAAAACTACCTGA 657
Query 714 AAACCCCAAAATGGGTTAATAAAATCGTAGCAAGATGGCGAATTGGAGCTCCAGTTGCAA 773
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 658 AAACCCCAAAATGGGTTAATAAAATCGTAGCGAGATGGCGAATTGGAGCTCCGGTAGCAA 717
Query 774 GTGTTCGACAAGCAGGTGGTGTaggagcagcaggacccggagctggaggaggagtaggag 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTGTTCGACAAGCAGGTGGTGTAGGAGCAGCAGGACCCGGAGCTGGAGGAGGAGTAGGAG 777
Query 834 gaggaggagcTTATTCAAGCGCTCGTGCCCCACCCGAGAGTTCAAACACAGCATTCAGAG 893
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 778 GAGGAGGAGCTTATTCAAGCGCTCGTGCCCCACCAGAGAGTTCAAACACAGCATTCAGAG 837
Query 894 GTCGATCATATCGTCTCACCGACTGAAATAGAAATCTTCTCGAGTTTCTTTGTTTTCATC 953
|||||||||||||||||||||| |||||||||||| |||| | ||||| |||||| |||
Sbjct 838 GTCGATCATATCGTCTCACCGATTGAAATAGAAATTTTCTTGCGTTTCGTTGTTTCCATA 897
Query 954 ATA-TCAAATCTTTTTCAAACAATGCCACTAACTAA-TCCCAGGTAGCTTTGTGTTTTCG 1011
|| | |||| |||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 898 ATCCT-AAATGTTTTTCAAACAATGCCACTAAC-AAGTCTCAGGTAGCTTTGTGTTTTCG 955
Query 1012 AACAGTACAGTTTTTGAATATATGACTCTGTAGGAAGAATCTTTGAGGTTTTAATACAAT 1071
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 956 AGCAGTACAGTTTTTGAATATATGACTTTGTAGGAAGAATCTTTGAGGTTTTAATACAAT 1015
Query 1072 GTTCTTTTC 1080
||| |||||
Sbjct 1016 GTTGTTTTC 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5