BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29340.1
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328774 jgi|Araly1|328774|fgenesh1_pm.C_scaffold_7001001 649 0.0
Ahg480492 jgi|Araly1|480492|fgenesh2_kg.3__3193__AT2G19770.1 412 1e-114
> Ahg328774 jgi|Araly1|328774|fgenesh1_pm.C_scaffold_7001001
Length=405
Score = 649 bits (351), Expect = 0.0
Identities = 388/406 (96%), Gaps = 2/406 (0%)
Strand=Plus/Plus
Query 72 ATGTCGTGGCAAACTTACGTTGATGAGCATTTGATGTGTGATGTTGGCGATGGTCAAGGA 131
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTGGCAAACTTACGTTGATGAACATTTGATGTGTGATGTTGGCGATGGTCAAGGA 60
Query 132 CACCACCTTACTGCTGCCGCTATCGTTGGTCATGACGGTAGCGTTTGGGCTCAGAGCGCC 191
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 61 CACCACCTTACCGCTGCTGCTATCGTTGGTCATGATGGTAGCGTTTGGGCTCAGAGCTCC 120
Query 192 AACTTCCCTCAGTTCAAGGGACAGGAGTTCAGTGATATTATGAAAGATTTCGACGAACCG 251
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 AACTTTCCTCAGTTCAAGGGACAGGAGTTCAGTGATATAATGAAAGATTTCGATGAACCG 180
Query 252 GGTCACTTGGCACCCAC-GGGATTATTCATGGCAGGAGCAAAGTACATGGTGATCCAAGG 310
|||||||||||||| || ||| |||||| | |||||||| ||||||||||| ||||||||
Sbjct 181 GGTCACTTGGCACCAACAGGG-TTATTCCTAGCAGGAGCTAAGTACATGGTTATCCAAGG 239
Query 311 TGAGCCCGGGGCTGTAATCCGTGGCAAGAAGGGAGCAGGAGGCATAACGATAAAGAAAAC 370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGAGCCCGGGGCTGTAATCCGTGGCAAGAAGGGAGCAGGAGGCATAACGATAAAGAAAAC 299
Query 371 AGGACAGTCATGTGTGTTTGGGATCTATGAAGAGCCAGTGACACCAGGACAGTGCAACAT 430
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AGGACAGTCATGTGTGTTTGGGATCTACGAAGAGCCAGTGACACCAGGACAGTGCAACAT 359
Query 431 GGTCGTCGAGAGGTTGGGTGATTACCTCCTCGAACAGGGTCTCTAG 476
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 GGTCGTCGAAAGGTTGGGTGATTACCTCCTCGAACAGGGTCTCTAG 405
> Ahg480492 jgi|Araly1|480492|fgenesh2_kg.3__3193__AT2G19770.1
Length=671
Score = 412 bits (223), Expect = 1e-114
Identities = 378/452 (84%), Gaps = 14/452 (3%)
Strand=Plus/Plus
Query 48 aaaaaataagaa-aag-aagaaga-ag-aTGTCGTGGCAAACTTACGTTGATGAGCATTT 103
|||||| ||||| ||| || ||| || |||||||||||| | |||||||||||||||||
Sbjct 49 AAAAAAGAAGAAGAAGAAATCAGAGAGAATGTCGTGGCAAGCATACGTTGATGAGCATTT 108
Query 104 GATGTGTGATGTTGGCGATGGTCAAGGACACCACCTTACTGCTGCCGCTATCGTTGGTCA 163
|||||||||||| ||||| || ||||| |||||||| || || ||||||||| | || ||
Sbjct 109 GATGTGTGATGTCGGCGACGGCCAAGGTCACCACCTAACCGCCGCCGCTATCATCGGCCA 168
Query 164 TGACGGTAGCGTTTGGGCTCAGAGCGCCAACTTCCCTCAGTTCAAGGGACAGGAGTTCA- 222
||||||||||||||||||||||||||| || || ||||||||||| || ||| |||
Sbjct 169 TGACGGTAGCGTTTGGGCTCAGAGCGCTAATTTTCCTCAGTTCAAACCTCAAGAGATCAC 228
Query 223 GTGATATTATGAAAGATTTCGACGAACCGGGTCA-CTTGGCACCCACGGGATTATTCATG 281
| || |||||||| |||||||| || |||||||| || | | |||||||| || ||| |
Sbjct 229 G-GACATTATGAAGGATTTCGATGAGCCGGGTCATCTCG-CTCCCACGGGCTTGTTCCTC 286
Query 282 GCAGGAGC-AAAGTACATGGTGATCCAAGGTGAGCCCGGGGCTGTAATCCGTGGCAAGAA 340
||||| || |||||| ||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 287 GCAGG-GCTAAAGTATATGGTAATCCAAGGCGAGCCTAATGCTGTCATCCGTGGCAAGAA 345
Query 341 GGGAGCAGGAGGCATAACGATAAAGAAAACAGGACAGTCA-TGTGTGTTTGGGATCTATG 399
|||||| ||||| || ||||| |||||||||||||| ||| || |||||||| | || |
Sbjct 346 GGGAGCTGGAGGGATCACGATCAAGAAAACAGGACAATCAATG-GTGTTTGGTTTGTACG 404
Query 400 AAGAGCCAGTGACACCAGGACAGTGCAACATGGTCGTCGAGAGGTTGGGTGATTACCTCC 459
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 405 AAGAGCCAGTGACTCCAGGACAATGCAACATGGTTGTCGAGAGGTTGGGTGATTACTTGA 464
Query 460 TCGAACAGGGTCTCTAGAATCTTCTTACAATG 491
||||||||||||| || || | ||| ||||||
Sbjct 465 TCGAACAGGGTCTTTA-AACCATCT-ACAATG 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25999829394
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5