BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29350.1

Length=798
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945086 jgi|Araly1|945086|scaffold_701315.1                        682    0.0  


> Ahg945086 jgi|Araly1|945086|scaffold_701315.1
Length=440

 Score =  682 bits (369),  Expect = 0.0
 Identities = 417/439 (95%), Gaps = 7/439 (2%)
 Strand=Plus/Plus

Query  107  tctcgcc-g-g-agaagaagaaagaTGTCGTGGCAATCATACGTCGATGACCATCTCATG  163
            ||||||| | | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    TCTCGCCGGAGAAGAAGAAGAAAGATGTCGTGGCAATCGTACGTCGATGACCATCTCATG  60

Query  164  TGCGAGGTCGAAGGCAACCACCTCACACACGCCGCCATCTTCGGCCAAGACGGCAGTGTC  223
            |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct  61   TGCGAGGTCGAAGGTAACCACCTCAAACACGCCGCCATCTTAGGCCAAGACGGCAGTGTC  120

Query  224  TGGGCTCAGAGCTCAGC-TTTCCCTCAGTTGAAGCCTGCAGAGATAGCAGGAATCAACAA  282
            ||||||||||||||  | |||||||||||||||||||| |||||||| ||||||||||||
Sbjct  121  TGGGCTCAGAGCTC-TCATTTCCCTCAGTTGAAGCCTGAAGAGATAGTAGGAATCAACAA  179

Query  283  AGACTTTGAAGAAGCCGGACATCTTGCCCCAACCGGGCTATTCCTTGGCGGTGAGAAGTA  342
            ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct  180  AGACTTTGAAGAAGCCGGACATCTTGCCCCAACCGGGCTTTTTCTTGGCGGTGAAAAGTA  239

Query  343  CATGGTTGTCCAAGGTGAGGCTGGAGCCGTCATCCGAGGGAAAAAGGGACCTGGTGGAGT  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CATGGTTGTCCAAGGTGAGGCTGGAGCCGTCATCCGAGGGAAAAAGGGACCTGGTGGAGT  299

Query  403  CACTATCAAGAAGACTACTCAAGCTCTAGTCTTTGGTATCTATGATGAACCGATGACCGG  462
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  300  CACTATCAAGAAGACTACTCAAGCTCTAGTCTTTGGCATCTATGATGAACCGATGACTGG  359

Query  463  AGGGCAATGCAACTTGGTCGTGGAGAGGCTCGGCGATTACCTTATCGAGTCTGGTCTCTA  522
            ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct  360  AGGGCAATGCAACTTGGTCGTCGAGAGGCTTGGTGATTACCTTATCGAGTCTGGTCTCTA  419

Query  523  AGTTCAC-TCAAAGTGCTT  540
            ||||||| | |||||||||
Sbjct  420  AGTTCACAT-AAAGTGCTT  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29469014841


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5