BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29360.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945085 jgi|Araly1|945085|scaffold_701314.1 2527 0.0
Ahg950331 jgi|Araly1|950331|scaffold_802218.1 97.1 4e-19
> Ahg945085 jgi|Araly1|945085|scaffold_701314.1
Length=1652
Score = 2527 bits (1368), Expect = 0.0
Identities = 1554/1642 (95%), Gaps = 19/1642 (1%)
Strand=Plus/Plus
Query 207 GAGAAAGACAGAGGAAAGAAAAATGGGTCA-AAGACTGAATCTAGTCTTCTGGATTTTTG 265
|||||||||||| | | ||||||||| | ||||||||| ||| |||||||||||| ||
Sbjct 1 GAGAAAGACAGA-TTATG-AAAATGGGT-ACAAGACTGAAGCTAATCTTCTGGATTTGTG 57
Query 266 TCTCCATTCTTGCCTTTTTGAATTTTGGTATGGCTAGCAAGATTGGGATATGTTATGGAA 325
|||||||| ||||||| ||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 58 TCTCCATTGTTGCCTTCTTGGATTTTGGTAAGGCAAGCAAGATTGGGATATGTTATGGAA 117
Query 326 GAAATGCTGATAATCTTCCAAGTCCTAACAGAGTCTCTGAGCTAATCCAACATCTCAACA 385
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAAATGCTGATAATCTTCCGAGTCCTAACAGAGTCTCTGAGCTAATCCAACATCTCAACA 177
Query 386 TCAAATTTGTTCGAATCTATGACGCCAACATTGATGTTCTTAAAGCTTTTGCAAACACTG 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCAAATTTGTTCGAATCTATGACGCCAACATTGATGTTCTTAAAGCTTTTGCAAACACTG 237
Query 446 GAATCGAGCTTATGATTGGTGTCCCTAACGCTGATCTACTTGCATTTGCTCAGTTTCAAT 505
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGTCGAGCTTATGATTGGTGTCCCTAACGCTGATCTACTTGCATTTGCTCAGTTTCAAT 297
Query 506 CCAATGTAGATACTTGGCTTAGCAACAACATCCTTCCTTATTATCCATCTACCAAAATCA 565
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 298 CCAATGTAGATACTTGGCTTAGCAACAACATCCTCCCTTATTATCCAGCTACCAAAATCA 357
Query 566 CTTCGATTTCAGTTGGTCTTGAAGTAACTGAAGCACCAGACAATGCCACTGGTCTAGTCT 625
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 CTTCGATTTCTGTCGGTCTTGAAGTAACCGAAGCACCAGACAATGCCACTGGTCTAGTCT 417
Query 626 TACCTGCGATGCGAAACATTCACACAGCTCTTAAGAAGTCTGGTTTGGATAAAAAGATCA 685
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 418 TACCCGCGATGCGAAACATTCACACTGCTCTTAAGAAGTCTGGTTTGGATAAAAAGATCA 477
Query 686 AGATCTCGAGCTCACATTCCCTTGCTATCTTGTCACGCTCCTTCCCGCCTTCGTCAGCTT 745
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 478 AGATCTCGAGCTCACATTCCCTTGCTATCTTGTCACGCTCGTTCCCGCCTTCATCGGCTT 537
Query 746 CTTTCAGCAAGAAGCATTCAGCGTTCTTGAAACCAATGCTTGAGTTCTTGGTTGAGAATG 805
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTTCAGCAAGAAGCACTCAGCGTTCTTGAAACCAATGCTTGAGTTCTTGGTTGAGAATG 597
Query 806 AGTCTCCCTTTATGATAGACCTGTATCCGTATTATGCTTACAGAGATTCCACTGAAAAAG 865
||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 598 AGTCTCCGTTTATGATCGACTTGTATCCGTATTATGCTTACAGAGATTCCACTGAAAAGG 657
Query 866 TTCCGTTGGAGTATGCTCTATTCGAGTCATCTTCGCAGGTTGTTGATCCTGCCACGGGTT 925
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 658 TTCCGTTGGAGTACGCTCTATTCGAGTCATCTTCGCAGGTTGTTGACCCTGCCACGGGTT 717
Query 926 TGCTTTACTCCAACATGTTTGATGCTCAGCTTGACGCTATCTATTTCGCTTTGACTGCTA 985
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 718 TGCTTTACTCCAACATGTTTGATGCTCAGCTTGACGCTATCTATTTCGCCTTGACGGCTA 777
Query 986 TGAGCTTTAAGACCGTTAAGGTTATGGTCACTGAGTCCGGGTGGCCGAGTAAAGGCTCGC 1045
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 778 TGAACTTTAAGACCGTTAAGGTTATGGTCACTGAGTCGGGGTGGCCGAGTAAAGGCTCAC 837
Query 1046 CTAAAGAGACAGCTGCAACTCCTGAGAACGCTCTGGCTTACAATACCAACCTCATCCGCC 1105
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 838 CTAAAGAGACGGCTGCAACTCCTGATAACGCTCTGGCTTACAATACCAACCTCATCCGCC 897
Query 1106 ATGTCATTGGTGATCCAGGTACTCCTGCAAAGCCTGGAGAAGAGATAGATGTGTACTTAT 1165
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATGTCATCGGCGATCCAGGTACTCCTGCAAAGCCTGGAGAAGAGATAGATGTGTACTTAT 957
Query 1166 TCTCGTTGTTCAATGAGAACCGGAAGCCTGGGATAGAATCCGAGAGAAACTGGGGAATGT 1225
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 958 TCTCGTTGTTCAATGAGAACCGGAAGCCCGGGATAGAATCTGAGAGAAACTGGGGAATGT 1017
Query 1226 TCTACGCGAACGGAACTAATGTTTACGCTTTAGACTTCACTGGGGAAAACACTACGCCTG 1285
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1018 TCTACGCGAACGGAACAAATGTTTACGCTTTAGACTTTACTGGGGAAAACACTACCCCAG 1077
Query 1286 TTTCTCCAACAAATTCAACCACAGGTACCAGTCCAAGTCCAAGTTCAAGTCCAATTATCA 1345
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1078 TTTCTCCAACAAATTCAACCACGGGTACCAGTCCAAGTCCAAGTTCAAGTCCAATTAGC- 1136
Query 1346 ACGGTAACTCGACAGTAACCATCggaggaggaggaggaggagg---a--A-CCAAGAAAT 1399
||||||||||| |||| ||| |||||||||||||||||||| | | |||||||||
Sbjct 1137 --GGTAACTCGACCGTAATCATTGGAGGAGGAGGAGGAGGAGGGGGAGGAACCAAGAAAT 1194
Query 1400 GGTGTATTGCTTCTTCACAAGCTTCGGTAACGGAACTGCAGACTGCATTGGACTGGGCTT 1459
||||||||||||||||||||||||| || || ||||||||||| || |||||||||||||
Sbjct 1195 GGTGTATTGCTTCTTCACAAGCTTCAGTGACAGAACTGCAGACCGCGTTGGACTGGGCTT 1254
Query 1460 GTGGTCCTGGAAATGTTGATTGTTCAGCTGTTCAACCAGACCAACCTTGCTTTGAACCAG 1519
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1255 GTGGTCCTGGAAATGTTGATTGTTCCGCTGTTCAACCAGACCAACCTTGCTTTGAACCAG 1314
Query 1520 ATACTGTTCTCTCACACGCATCTTATGCATTCAACACTTATTACCAACAGAGCGGAGCAA 1579
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1315 ACACTGTTCTCTCACACGCATCGTATGCGTTCAACACTTATTACCAACAGAGCGGAGCAA 1374
Query 1580 GCAGCATAGATTGCAGCTTTAATGGAGCCAGCGTTGAAGTTGACAAGGATCCAAGTTATG 1639
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1375 GCAGAATAGATTGCAGCTTTAATGGAGCCAGCGTTGAAGTCGACAAGGACCCAAGTTATG 1434
Query 1640 GTAACTGTTTGTACATGATTGCTCCGGCTACCGACGGATTCAACAGAACAATGGCGGGTA 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GTAACTGTTTGTACATGATTGCTCCGGCTACCGACGGATTCAACAGAACAATGGCGGGTA 1494
Query 1700 ATATCACTGGAAACATAACTGCCATTGATTCCCCCTTGGCTTCGCCTTCGTCAACCAATG 1759
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1495 ACATCACTGGAAATATAACTGCCATTGATTCTCCCTTGGCTTCGCCTTCGTCAACCAATG 1554
Query 1760 AAGCATTCAGACAAATGGTGGTT------GCAGTCTCTGTTTTGTTGCCGTGTTTTGTAG 1813
|||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1555 AAGCATTCAGACAAATGGTGATTTCCCTTGCAGTCTCTGTTTTGTTGCCGTGTTTTGTAA 1614
Query 1814 TTTGTTCGAGTATTTGGTGACA 1835
|||||| ||||||||| |||||
Sbjct 1615 TTTGTTTGAGTATTTGATGACA 1636
> Ahg950331 jgi|Araly1|950331|scaffold_802218.1
Length=1561
Score = 97.1 bits (52), Expect = 4e-19
Identities = 190/253 (75%), Gaps = 24/253 (9%)
Strand=Plus/Plus
Query 1399 TGGTGTATTGCTTCTTC-ACAAGCTTCGGTA-ACG-GAACTGCAGA-CTGCATTGGACTG 1454
||||| |||||||| || | ||||||| | | | | || ||| | | ||| ||||| ||
Sbjct 1125 TGGTGCATTGCTTCCTCTA-AAGCTTCAG-AGA-GAGATCTG-AAAGGTGCTTTGGATTG 1180
Query 1455 GGCTTGTGGTCCTGGAAATGTTGATTGTTCAGCTGTTCAACCA-GACCAACCTTGCTTTG 1513
||||||||||||||||||||||||||| ||||| |||| ||| | ||| ||||| |||
Sbjct 1181 GGCTTGTGGTCCTGGAAATGTTGATTGCACAGCTATTCAGCCAAG-CCAGCCTTG-TTTC 1238
Query 1514 -AACCAGATACTGTTC-TCTCACACGCATCTTAT-GCATTCAACA-CTTATTACCAACAG 1569
||||||||||| || | || || || |||| | | ||||| | || ||| ||| |||
Sbjct 1239 CAACCAGATACT-TTGGTTTCTCATGCTTCTT-TCGTGTTCAATAGCT-ATTTCCAGCAG 1295
Query 1570 AGCGGAGCAAGCAG-CATAGATTGCAGCTTTA-ATGGAGCCAGCGTTGAAGTTGA-CAAG 1626
| |||||| ||| | | | ||| |||||| | ||||| | ||| ||| | | ||||
Sbjct 1296 AATAGAGCAA-CAGACGTTGCTTGTAGCTTTGGA-GGAGCTGGTGTT-AAGGTCAACAAG 1352
Query 1627 GATCCAAGTTATG 1639
|| || |||||||
Sbjct 1353 GACCCTAGTTATG 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5