BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29370.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945082 jgi|Araly1|945082|scaffold_701311.1 296 2e-79
> Ahg945082 jgi|Araly1|945082|scaffold_701311.1
Length=1204
Score = 296 bits (160), Expect = 2e-79
Identities = 264/311 (85%), Gaps = 19/311 (6%)
Strand=Plus/Plus
Query 1 ATGATCCCCAAAGAAGAAGTTGAGCGGCCGCAGaaaaaaaCGAAGCTTCCGTCGTTACCA 60
|||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 21 ATGATCCCGGAAGAAGAAGTTGAGCCGCCGCAGAAAAAAACGAAGCTTCCGCCGCTACCA 80
Query 61 TGTGAGACGTCGTTGTTCTTG-CAACTTCCCGACGAGATCCTGGTGAACTGCTTGGCACG 119
||| || ||||| | || ||| | ||||||| |||| ||| | ||||||||||| |||||
Sbjct 81 TGTCAGTCGTCG-T-TT-TTGTC-ACTTCCCAACGAAATCATTGTGAACTGCTTTGCACG 136
Query 120 TCTCTCTAAATCGTCTTACCGTTCACTCTCCCTCGTCTGCAAAACCTTTCGTTCTCTCCT 179
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 137 TATCTCTAAATCGTCTTACCGTTCACTCTCCCTCGTCTGCAAAACCTTTCGTTCTCTCAT 196
Query 180 CCACT-CTCAACCCCTCTACT-CCGCGCGATATCAACTCGGAACCACGGAGATCTGCTGC 237
| || ||| | |||||| | ||||||||| |||||| |||||||| ||||||||| ||
Sbjct 197 CT-CTTCTCCAGACCTCTA-TGCCGCGCGATCTCAACTTGGAACCACCGAGATCTGCGGC 254
Query 238 CTTTATCTCTGTCTACGGTT-TGTTACCG--CTA--C--GGAACCAGTCTC-ACGCTGGT 289
|| ||||||||||||||||| | |||| | | | ||||||| ||| ||||||||
Sbjct 255 CTCTATCTCTGTCTACGGTTCTCC-ACCGTGCCATTCAAGGAACCAA-CTCGACGCTGGT 312
Query 290 TTACTCTCAGT 300
| |||||||||
Sbjct 313 TCACTCTCAGT 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5