BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G29390.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889195 jgi|Araly1|889195|Al_scaffold_0007_1181                    327    3e-89
  Ahg480494 jgi|Araly1|480494|fgenesh2_kg.3__3195__AT2G19750.1         237    6e-62
  Ahg950338 jgi|Araly1|950338|scaffold_802225.1                        215    3e-55


> Ahg889195 jgi|Araly1|889195|Al_scaffold_0007_1181
Length=189

 Score =  327 bits (177),  Expect = 3e-89
 Identities = 185/189 (98%), Gaps = 0/189 (0%)
 Strand=Plus/Plus

Query  82   ATGGGTAAGGTACACGGTTCCTTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCGAAA  141
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTAAGGTACACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCGAAA  60

Query  142  GTGGCAAAGCAGGATAAGAAGAAGAAGCCACGTGGCCGTGCTCACAAAAGGTTGCAACAC  201
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   GTGGCAAAGCAGGATAAGAAGAAGAAGCCACGTGGCCGTGCCCACAAAAGGTTGCAACAC  120

Query  202  AATCGCCGTTTCGTAACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAACTCTTCT  261
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  AATCGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAACTCGTCT  180

Query  262  GAGAAGTAG  270
            |||||||||
Sbjct  181  GAGAAGTAG  189


> Ahg480494 jgi|Araly1|480494|fgenesh2_kg.3__3195__AT2G19750.1
Length=443

 Score =  237 bits (128),  Expect = 6e-62
 Identities = 189/217 (87%), Gaps = 10/217 (5%)
 Strand=Plus/Plus

Query  61   GAAGAATCCTC-GTAAAC--AATCATGGGTAAGGTACACGGTTC-CTTGGCTCGTGCCGG  116
            ||||||| ||| |||| |  ||  ||||| ||||| |||||||| | |||||||||||||
Sbjct  40   GAAGAAT-CTCTGTAATCTGAAAAATGGGAAAGGTCCACGGTTCAC-TGGCTCGTGCCGG  97

Query  117  TAAGGTGAGAGGTCAGACACCGAAAGTGGC-AAAGCAGGATAAGAAGAAGAAGCCACGTG  175
            |||||||||||||||||| || |||||||| ||| ||||| |||||||||||||| ||||
Sbjct  98   TAAGGTGAGAGGTCAGACGCCTAAAGTGGCTAAA-CAGGACAAGAAGAAGAAGCCTCGTG  156

Query  176  GCCGTGCTCACAAAAGGT-TGCAACACAATCGCCGTTTCGTAACCGCCGTTGTTGGATTT  234
            | |||||||||||  | | |||||||||| ||||||||||| |||||||||||||| |||
Sbjct  157  GTCGTGCTCACAAGCG-TCTGCAACACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTT  215

Query  235  GGCAAGAAGAGAGGACCCAACTCTTCTGAGAAGTAGA  271
            ||||||||||||||||| ||||| || ||||||||||
Sbjct  216  GGCAAGAAGAGAGGACCAAACTCATCAGAGAAGTAGA  252


> Ahg950338 jgi|Araly1|950338|scaffold_802225.1
Length=230

 Score =  215 bits (116),  Expect = 3e-55
 Identities = 171/197 (87%), Gaps = 6/197 (3%)
 Strand=Plus/Plus

Query  78   AATCATGGGTAAGGTACACGGTTCCTTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACC  137
            ||||||||| ||||| || || || |||||||||||||||||||| ||||| || |||||
Sbjct  18   AATCATGGGAAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAGGTTAGAGGACAAACACC  77

Query  138  GAAA-GTGGCAAAGCAGGATAAGAAGAAGAAGCC-ACGTGGCCGTGCTCACAAAAGGTTG  195
             ||| || || ||||| ||||||||||||||||| | | || |||||||||||  | |||
Sbjct  78   -AAAGGTTGCGAAGCAAGATAAGAAGAAGAAGCCTA-GAGGTCGTGCTCACAAGCGTTTG  135

Query  196  CAACACAATCGCCGTTTCGTAACCGCCGTTGTTGGATTT-GGCAAGAAGAGAGGACCCAA  254
            || ||||| ||||||||||| |||||||||||||| ||| || |||||||||||||||||
Sbjct  136  CAGCACAACCGCCGTTTCGTCACCGCCGTTGTTGG-TTTCGGAAAGAAGAGAGGACCCAA  194

Query  255  CTCTTCTGAGAAGTAGA  271
            |||||||||||||||||
Sbjct  195  CTCTTCTGAGAAGTAGA  211



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5