BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G29400.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945078 jgi|Araly1|945078|scaffold_701307.1 1273 0.0
> Ahg945078 jgi|Araly1|945078|scaffold_701307.1
Length=934
Score = 1273 bits (689), Expect = 0.0
Identities = 858/937 (92%), Gaps = 22/937 (2%)
Strand=Plus/Plus
Query 35 AAGTAAGAAGAAGAAAAAATAATGCTAAGGTTTCAATGTTTTCTTCACCTTCTTCAGCCT 94
||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAG-AAGAAGAAGATAAGATAATGCTAAGGTTTCAATGTTCACTTCACCTTCTTCAGCCT 59
Query 95 TCTATGGCGAAGAACAA-CAGCAACCACTCGAATATTTGTTTAC-ACAATTTGGCGCCGT 152
||||| || ||||| || || ||||||||||||||||| || | |||||||||||||||
Sbjct 60 TCTATTGCTAAGAAGAACCA-CAACCACTCGAATATTT-CTTCCTACAATTTGGCGCCGT 117
Query 153 TTCGGGTCACCGACACGATTCCTGTACAGAAGATCCAGGAGTTACGTGCGAATCGGTCGA 212
|||||||||||| | | || ||||||||||||| ||||| ||| | || |||
Sbjct 118 TTCGGGTCACCG----G----C---AC-GAAGATCCAGGAGATACGTACGATTTGGCCGA 165
Query 213 GGGAGAGTGGAAAGTTGCGAGTAAATGGAATAGGTAGAGAAATGGAAGAAGGTGTG-GAA 271
|| | ||||||||||||||||||||||| |||||| |||||||||||||||||| | |||
Sbjct 166 GGAATAGTGGAAAGTTGCGAGTAAATGGTATAGGTCGAGAAATGGAAGAAGGTG-GAGAA 224
Query 272 GAATTCGAAGAAGTAGATGATGGAGATGATGATGAGGTAGAAGATGAGTTCTCGGCGAAG 331
||||| ||||||| | | |||||||||||||| ||||||||||||||||| || ||| |
Sbjct 225 GAATTTGAAGAAG-A-A-GATGGAGATGATGAAGAGGTAGAAGATGAGTTGTCTTCGAGG 281
Query 332 AAGAGAGGCGTTTACAGAGCGAAGAAAGAGAAGATTGATTACGATAAAGACCCTGAGTTT 391
||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| || ||
Sbjct 282 AAGAGAGGCGTTTACGGAGCGAAAAAAGAGAAGATAGATTACGACAAAGACCCAGAATTC 341
Query 392 GCGGATATTCTTGGAGATTGTTTAGATAACCCAGATAAAGCTCAAAAGAAGATGGAAGAG 451
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 342 GCGGATATTCTTGGAGATTGTTTAGATAACCCAGAGAAAGCTCAAAAGAAGATGGAAGAG 401
Query 452 AGATTGAGGAAGAAGAGGAACAAAATTCTTCATACTAAGACTGGTTCTGCAACTTCGATG 511
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 402 AGGTTGAGGAAGAAGAGGAACAAAATCCTGCATACTAAGACTGGTTCTGCAACTTCGATG 461
Query 512 CCAGTGACGTTTAACAAATTTGAGTATTCGAATTCATACATGTGGTTGGAGTTTTACAAC 571
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CAAGTGACGTTTAACAAATTTGAGTATTCGAATTCATACATGTGGTTGGAGTTTTACAAT 521
Query 572 ACACCGCTGGACAAAGACATAGCCTTGATCTCTGATACAATCCGGTCCTGGCATATCCTT 631
| || ||||| |||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 522 GCTCCTCTGGATAAAGACATAGCCTTGATCTCTGATACTATCCGTTCATGGCATATCCTT 581
Query 632 GGACGACTTGGTGGATACAACTCCATGAATATGCAATTATCACAAGCACCACTGGATAAG 691
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 582 GGACGACTTGGTGGATACAACTCCATGAATATGCAATTATCACAAGCGCCACTGGATAAG 641
Query 692 AGGCCAAACTATGATGCCATACTTGGAGCTAATGTCGAGCCCACCACGTTTTATAACATC 751
|| |||||||||||||| || |||||||||||||||||||||||||| |||||||| |||
Sbjct 642 AGACCAAACTATGATGCTATCCTTGGAGCTAATGTCGAGCCCACCACATTTTATAATATC 701
Query 752 GGGGATCTTGAGGTTCAAGACAATGTCGCTCGAATATGGCTCGATATTGGGACCTCGGAG 811
|||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 702 GGGGATCTTGAGGTCCAAGACAACATCGCTCGCATATGGCTCGATATTGGGACCTCGGAG 761
Query 812 CCGTTGATTCTCGATGTTCTGATAAACGCATTGACACAAATCAGCTCAGATTATGTCGGG 871
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CCTTTGATTCTTGATGTTCTGATAAACGCATTGACACAAATCAGCTCAGATTATGTCGGG 821
Query 872 ATAAAGAAAGTTGTGTTTGGTGGATCTGAGTTCGAGAGCTGGAAGGAGAATATGACATCC 931
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 822 ATAAAGAAAGTTGTGTTTGGTGGATCTGAGTTCGAAAGCTGGAAGGAGAATATGACATCC 881
Query 932 GAGGAATCTGGTTTCAGAGTCCACAAGATTTAACATC 968
|||||||||||||||||||||||||||||||||||||
Sbjct 882 GAGGAATCTGGTTTCAGAGTCCACAAGATTTAACATC 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5